Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g3480 ATGTTGAAATCACTGACCTTCAAACCCATCTTTCTCAACCTCACAACAACAAAACTCTTTCCATTCTCTAAATTCAATTCTCGTTACTCTTCAACCACTTCACAACAAAACCAGTTCACCGTTTCATATCTCGTTACCAATTTCGGTTTCTCCTCAGAAACCGCTACAAAGGCTTCAAAACGCTTTCATTTCGACACTTCCGAAAAGCCAGATTCAGTAATCGCCATCTTCAGAAACTACGGTTTCTCTGATTCCCAGATAAACAACCTTGTTAGACAAGCACCCAACATTCTTAAATGTGACCCCCACAAGAGGGTTTTGCCAAAGTTTCAATTTTTACTCTCAAAAGGTGCTTCAGATTCTGAAATTGTGGAGATTGTAAGTAGAAGCCCTAGAATTCTCTATTCAAGTCTTGAGAATAGCATAATTCCTACTTTTGAATTGGTAAGAAGGTTCCTTCCATCTAATGAGAAAGTTATTGAACGAATACTTCAATGTAAATTTTTCTTTGGTCATTATCCTGTTATTAAGAATGTCAAGTTGTTGCTTGATGATGGAGTAACAGACTCAAATATAAGACATTTGTTACTCAAAAGACCATCTATATTATTATCTTATGACATGAGGAGTGCTTTGGATATGGTTAAGGAAATGGGATTTAATGATCCTTCTAATGTAAATTTTTGTATAGCATTGTTAGCCAAAAGGGCCATGTCGAAATCCCGGTGGGATGCGAAAGTTGTTGTTTTTAAGAGATGGGGTTGGTCTGATGAAATGGTTCTTCAAGCGTTTAGGAAGCGACCCTTGTGCATGCTATCATCCCCGGAGAAGATTAATAAGGTCATGAGATTTTGGGTGAATGAGTTGGGTTGGAACTCTTCGGCTCTTGTTAAAAGGCCGGATATTTTTTCCTATAGTTTGGAGAATAGGATCATTCCGAGGGCATGTGTTGTTTCATATCTGATCTCCAAAGGTTTGATTGAAAATAATGTTGAAGTGTCTACCCCTTTTGCTGTTAATGAAAAGGTGTTTCTTGAAAAGTATGTGCAAAGTTTTAAAGAGGAAAGACATGATTTGTTAAAGCTATACCAGGAGAAAATGGATCATAAGAAAATCAAGGAAAATGATGATGCGTCTGGAAGCTATTGA 1149 0.3716 MLKSLTFKPIFLNLTTTKLFPFSKFNSRYSSTTSQQNQFTVSYLVTNFGFSSETATKASKRFHFDTSEKPDSVIAIFRNYGFSDSQINNLVRQAPNILKCDPHKRVLPKFQFLLSKGASDSEIVEIVSRSPRILYSSLENSIIPTFELVRRFLPSNEKVIERILQCKFFFGHYPVIKNVKLLLDDGVTDSNIRHLLLKRPSILLSYDMRSALDMVKEMGFNDPSNVNFCIALLAKRAMSKSRWDAKVVVFKRWGWSDEMVLQAFRKRPLCMLSSPEKINKVMRFWVNELGWNSSALVKRPDIFSYSLENRIIPRACVVSYLISKGLIENNVEVSTPFAVNEKVFLEKYVQSFKEERHDLLKLYQEKMDHKKIKENDDASGSY* 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g3480 382 PANTHER CGI-12 PROTEIN-RELATED 23 369 IPR003690 GO:0003690|GO:0006355
Psa1g3480 382 Pfam mTERF 75 221 IPR003690 GO:0003690|GO:0006355
Psa1g3480 382 Pfam mTERF 239 344 IPR003690 GO:0003690|GO:0006355
Psa1g3480 382 Gene3D Transcription termination factor 3, mitochondrial 172 362 IPR038538 -
Psa1g3480 382 PANTHER TRANSCRIPTION TERMINATION FACTOR FAMILY PROTEIN 23 369 - -
Psa1g3480 382 SMART mt_12 193 221 IPR003690 GO:0003690|GO:0006355
Psa1g3480 382 SMART mt_12 124 155 IPR003690 GO:0003690|GO:0006355
Psa1g3480 382 SMART mt_12 88 119 IPR003690 GO:0003690|GO:0006355
Psa1g3480 382 SMART mt_12 293 327 IPR003690 GO:0003690|GO:0006355
Psa1g3480 382 SMART mt_12 261 292 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g3480 Psa-Chr1 301515065 301516213 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Psa1g3480 mTERF 1.6e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g3480 K15032 - gmx:102666622 398.667