Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g3479 ATGCTTCGCAACAACATCATCTTCAATTCCCATCATTACATACCCAAAATCCCCATTCATTTTCCATTCCAATTTTCTCACAATTTCAAACTCTGCACCACCGCTTCACATTCCGAATCTGATTCCGACTCTTTCACCGTCTCCTACCTCATCAACACCATCGGTTTCACTCGTGAAACAGCTCTCAAAGCTTCAAAACGAATTCGTATCAAGTCCCCAGAAAAACCCAATTCAGTTTTCACCTTCTTCAGAAACCACGGTTTTCCAGACTCCAGCATTAAGAAAATCCTCATAAAAGAACCATGGCTTCTTTCTACCGATACCCACAATTCAATTCGTCCAAAGTTCGAATTTTTCATCTCCAAAGGCGTTTCACTCTCTGAAGTCGCTACCTTGTTAACGGTGAGCCCTAGAATTTTACAAAGTAGTTTGGAAAATCGAATTATCCCTCTTTTTGAATTTTACAAGAGGTTTTTGAAATCTGATAAAGCTACCATTTGTTGTATGATTCGAAATTCGATTCCATTGTCTTACAATCTTACTACGGTTAACGTAAAGTTGATGATGGATTACGGAGTTTGCGATTCCAGCATTGCTAGAGTGTTTCTCACAAGACCAACCATACTTGGAACAACAGATTTGATTCATACCTTGGAGGAAGTTAAGGGTTTAGGGTTTGACCCTTCAACTTCCACTTTTGGGATAGCTTTGATTGCAAAGAAATGTATGAGTAAAGCACTTTGGGATGAGAAAGTTGAGGTCTTTAAGAAATGGGGTTGGTCTGATCAAGCTGTTATTCAAGCATTTAGGATGCAGCCTAGTTTGATGTTGGCTTCGATCGATAAGATTAATTTGGTGATGAGTTTTTGGGTCGATCGATTGGGGTGGGATTCCTTGGCACTTACTAGAAGGCCACAAATATTTGGTTTTAGTTTGCAGAAAAGGGTGATTCCAAGGGCATTACTTCTGCAATATCTTATGATGAAAGGTTTGAGGAAAAAGAATGCAAGCTTAGTGGCACCATTTACTTGGTCTGAGAAACAGTTCCTGAGCAAATATGTTGTCTGTTTCAAGGATGAGTCTGATTATTTATTGAAACTCTACGAGGAAAACATGAATCTTGCATACACCAAGGAGAACATTGATATGCCATTCACCAAATAG 1164 0.3918 MLRNNIIFNSHHYIPKIPIHFPFQFSHNFKLCTTASHSESDSDSFTVSYLINTIGFTRETALKASKRIRIKSPEKPNSVFTFFRNHGFPDSSIKKILIKEPWLLSTDTHNSIRPKFEFFISKGVSLSEVATLLTVSPRILQSSLENRIIPLFEFYKRFLKSDKATICCMIRNSIPLSYNLTTVNVKLMMDYGVCDSSIARVFLTRPTILGTTDLIHTLEEVKGLGFDPSTSTFGIALIAKKCMSKALWDEKVEVFKKWGWSDQAVIQAFRMQPSLMLASIDKINLVMSFWVDRLGWDSLALTRRPQIFGFSLQKRVIPRALLLQYLMMKGLRKKNASLVAPFTWSEKQFLSKYVVCFKDESDYLLKLYEENMNLAYTKENIDMPFTK* 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g3479 387 Gene3D Transcription termination factor 3, mitochondrial 181 364 IPR038538 -
Psa1g3479 387 Gene3D Transcription termination factor 3, mitochondrial 54 180 IPR038538 -
Psa1g3479 387 PANTHER TRANSCRIPTION TERMINATION FACTOR FAMILY PROTEIN 19 377 - -
Psa1g3479 387 Pfam mTERF 184 350 IPR003690 GO:0003690|GO:0006355
Psa1g3479 387 Pfam mTERF 82 275 IPR003690 GO:0003690|GO:0006355
Psa1g3479 387 SMART mt_12 266 297 IPR003690 GO:0003690|GO:0006355
Psa1g3479 387 SMART mt_12 298 332 IPR003690 GO:0003690|GO:0006355
Psa1g3479 387 SMART mt_12 94 125 IPR003690 GO:0003690|GO:0006355
Psa1g3479 387 SMART mt_12 130 161 IPR003690 GO:0003690|GO:0006355
Psa1g3479 387 SMART mt_12 199 227 IPR003690 GO:0003690|GO:0006355
Psa1g3479 387 PANTHER CGI-12 PROTEIN-RELATED 19 377 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g3479 Psa-Chr1 301452972 301455363 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Psa1g3479 mTERF 7.8e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g3479 K15032 - gmx:102667698 345.51