Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g3478 ATGAGTAAAAAATTCTGGGATGATAAATTTGATGCCTTTAAGAAATGGGGTTGGTCCGAGGAAGATGTTGTTCGAGCATTTAGGTTTCAGCCTAATTTGTTGTCTGCTTCCATTGATAAGATTAATTTGGTGATGAGTTTTTGGGTTAATCAGTTAGGTTGGGATTCCTTGGCACTTCTTAAATGTCCACTGATGTTTAGGTATAGTTTTCATAAAAGGATCGTTCCAAGGGCCGAAGTTTTGCAGTTTCTTTCGATGAAAGGTTTAAGAGAAAAGAGTGCAAGCTTAGTGACACCATTGACTTATTCTGACAAAATGTTCTTGAGCAAGTTTGTCTTAAAGGAGGAGTCTGATTCTGATTATCTATTAAAGTTGTATGATGAAAAAATGAAACTTGCATACACAAAGGAGAACAGTGACAAGCATTTGCTAAATAGGTGA 441 0.3605 MSKKFWDDKFDAFKKWGWSEEDVVRAFRFQPNLLSASIDKINLVMSFWVNQLGWDSLALLKCPLMFRYSFHKRIVPRAEVLQFLSMKGLREKSASLVTPLTYSDKMFLSKFVLKEESDSDYLLKLYDEKMKLAYTKENSDKHLLNR* 147
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g3478 146 Gene3D Transcription termination factor 3, mitochondrial 1 122 IPR038538 -
Psa1g3478 146 Pfam mTERF 3 108 IPR003690 GO:0003690|GO:0006355
Psa1g3478 146 PANTHER CGI-12 PROTEIN-RELATED 1 135 IPR003690 GO:0003690|GO:0006355
Psa1g3478 146 PANTHER TRANSCRIPTION TERMINATION FACTOR FAMILY PROTEIN 1 135 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g3478 Psa-Chr1 301451849 301452289 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Psa1g3478 mTERF 2.7e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g3478 K15032 - mtr:MTR_2g437090 160.614