Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g3477 ATGTTCAAAGCATTGCTACACCCCAATGATTCAGCCATATCAACAACCTCAAGAATACTCTGCAACTTGCATTTCCCATTCTCCCACAAATTCCTCACCACCACCACCACTTCAAACCCACACTCACCCTCATTCGCTGTCTCCTACTTCATCAACAATCTCAAATTCTCATCAGAATCCGCTCTCAAAGCTTCCAAGCTTGTTCATTTCAAAACCTCAAAAAAACCCGATTCAGTTCTCAGCTTCTTCAGAACCCACGGTTTCACCGATTCAGATATACACAAAATCATCCGAAGAGAACCATGGCTTCTTTCCTGCGACACCCAGAAAAGGGTTCTCCCAAAGTTTCAATTTTTACTCTCCAAAGGCGCTTCTACCTCTGACGTTGTTCGCATCGTTGTAGGTAACCCTAGATTCATGAAATCAAGCTTGAATAACCGTGTTATCCCTATTTATAATTTGGTAACTCAATATCTTCAATCCGATCAAAAAACTATTGCCTCCATAATTGCATGTCCTTCTTTACTTTGTAGTGATTATCTAGCTCCTAATATTAATATGATGGCTGAGAATGGTGTTTGCTATTCTAGCATTTATAGAATTCTTCGAACTAGACCTAATGTTATCTTTTGTAGACTTAGAGAGTTAGAAGAGACGGTGAAGGAATTGAAAAACATGGGATTTGATCCTTCTAAATCATACTTTGGCGATGCATTGCTCGGCAAAATAGGTTTAAGTAAATCGAAATGGAATGAGAGAATTGATACGTTCAAGAGTTGGGGTTGGTCTGAGGAAACTGTTTTGGAAGCTATTAAGAGGCAGCCGAAATGTATGTTAGCATCGAACGACAAAATCAATAGGGTGATGAGTTTTTGGGTTAATGAGATGGATTGGGATTCTTCTTACTTAGTCAAGGGACCAGGGATGTTTGGTTATTGTTTGGAGAAAAGGATCATTCCAAGAGCTATGGTTATTTTCTATCTTCTAGCTAAGGGCTTGAGAAGTGAAAAAGCTAGCTTGCTTTCTCCATTTTATGTATCTGAGAAATTGTTTTTGGAACGGTATGTGTTATGTTTTAAAGAAGAGGAAAGTTCGCATCTATTGAAGTTATATCATGCAATGATGAAGTTGGGAGATAAGAAGGCAAGAGGCATAGAAGGATCATGA 1167 0.3882 MFKALLHPNDSAISTTSRILCNLHFPFSHKFLTTTTTSNPHSPSFAVSYFINNLKFSSESALKASKLVHFKTSKKPDSVLSFFRTHGFTDSDIHKIIRREPWLLSCDTQKRVLPKFQFLLSKGASTSDVVRIVVGNPRFMKSSLNNRVIPIYNLVTQYLQSDQKTIASIIACPSLLCSDYLAPNINMMAENGVCYSSIYRILRTRPNVIFCRLRELEETVKELKNMGFDPSKSYFGDALLGKIGLSKSKWNERIDTFKSWGWSEETVLEAIKRQPKCMLASNDKINRVMSFWVNEMDWDSSYLVKGPGMFGYCLEKRIIPRAMVIFYLLAKGLRSEKASLLSPFYVSEKLFLERYVLCFKEEESSHLLKLYHAMMKLGDKKARGIEGS* 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g3477 388 Pfam mTERF 243 351 IPR003690 GO:0003690|GO:0006355
Psa1g3477 388 Pfam mTERF 80 229 IPR003690 GO:0003690|GO:0006355
Psa1g3477 388 PANTHER TRANSCRIPTION TERMINATION FACTOR FAMILY PROTEIN 21 380 - -
Psa1g3477 388 PANTHER CGI-12 PROTEIN-RELATED 21 380 IPR003690 GO:0003690|GO:0006355
Psa1g3477 388 SMART mt_12 268 299 IPR003690 GO:0003690|GO:0006355
Psa1g3477 388 SMART mt_12 130 162 IPR003690 GO:0003690|GO:0006355
Psa1g3477 388 SMART mt_12 94 125 IPR003690 GO:0003690|GO:0006355
Psa1g3477 388 SMART mt_12 199 229 IPR003690 GO:0003690|GO:0006355
Psa1g3477 388 SMART mt_12 300 334 IPR003690 GO:0003690|GO:0006355
Psa1g3477 388 Gene3D Transcription termination factor 3, mitochondrial 169 366 IPR038538 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g3477 Psa-Chr1 301395704 301398403 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Psa1g3477 mTERF 1.6e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g3477 K15032 - gmx:102667698 343.969