Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g3466 ATGTTGAAGTTCAGTATATGTCCCATCAAAACCCTAACCCATCTCAACTGCTTACCTTCCCCACAACAATCACCATCCTCTCTACATTTCGAATCAACCCCATTCCAAGTCTCCTACCTCATCAACAATTTCGATTTCTCCCCACAATCCGCTTCCAAACTTTGCTCCACCTACCGTCTTAATTTCAAAACCACCCAAAATCCTGACTCTGTTATCAACTTCTTCACAGACTACGGTTTCTCTATTTCCCAGTTACGCCACATCATTGCCAAGGAACCATGGCTGCTTTCATGCAACTTCTCCAAAAGGGTCTTGCCAAAGTTTCTATTTTTTCTCTCCAAAGGTGCTTCTATCTCTGACGTTGTTAATCTTGTCAGCGAGAACCCTAGAATCTTGCGTCCCAGCTTGGAGAATCATATAGCCCCAACCTATGAATTGCTTTATACATTCCTGCGATCAGACCAGGACATTATTGCTTCTGCAATTCAGGCTCCAAATGTACTCTATCACCCTCTTGTGTCGCGTAACATTACAACGCTCATTGAGAATGGAGTAGCCCACACAACCATTGCGAAAATTCTTCGAAACAGGAACCGGACATTGCAGGTGCGTGACATGGTGAGTTTAGTGGAGGAATTAAAAGATTTGGGGTTTAATCCTTCAAAAATAAGTTTTGGTGCAGCATTGATTGCCAAAACATCGGTACCCAAAACCAGGTGGAACAAAAAAGTTGATACCTATAAGAAATGGGGTTGGTCTGATCAAGATGTCAATGAAGCATTTAAAAAGCAACCTTATTGTATGTTAAGGTCCATTGACAAGATTGATTTAGTCATGAATTTCTGGGTAAATCAATTGGGCTGGGATGCTATGGCCCTTGCCAAACAACCCACGCTTTTTAGCTTAAGTTTGGAAAAAAGGATCATTCCAAGGGCCTCGGTTGTGCAATTTCTTTTGATGAATGGTTTGAGAAATAAGAACGCAAGCTTAACTTCTCCATTTGTACCGTCTGAGAAGATGTTTCTGGATAGGTTTATAAAACGTTTTGAGAAGAAGTCGTCTTATCTATTAAACTTGTACGAGGAGAAACTCATTGCAGGGACAAAAATTGCATCTCATGATTAG 1125 0.4107 MLKFSICPIKTLTHLNCLPSPQQSPSSLHFESTPFQVSYLINNFDFSPQSASKLCSTYRLNFKTTQNPDSVINFFTDYGFSISQLRHIIAKEPWLLSCNFSKRVLPKFLFFLSKGASISDVVNLVSENPRILRPSLENHIAPTYELLYTFLRSDQDIIASAIQAPNVLYHPLVSRNITTLIENGVAHTTIAKILRNRNRTLQVRDMVSLVEELKDLGFNPSKISFGAALIAKTSVPKTRWNKKVDTYKKWGWSDQDVNEAFKKQPYCMLRSIDKIDLVMNFWVNQLGWDAMALAKQPTLFSLSLEKRIIPRASVVQFLLMNGLRNKNASLTSPFVPSEKMFLDRFIKRFEKKSSYLLNLYEEKLIAGTKIASHD* 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g3466 374 PANTHER CGI-12 PROTEIN-RELATED 14 368 IPR003690 GO:0003690|GO:0006355
Psa1g3466 374 SMART mt_12 86 117 IPR003690 GO:0003690|GO:0006355
Psa1g3466 374 SMART mt_12 191 219 IPR003690 GO:0003690|GO:0006355
Psa1g3466 374 SMART mt_12 122 153 IPR003690 GO:0003690|GO:0006355
Psa1g3466 374 SMART mt_12 290 324 IPR003690 GO:0003690|GO:0006355
Psa1g3466 374 SMART mt_12 258 289 IPR003690 GO:0003690|GO:0006355
Psa1g3466 374 Gene3D Transcription termination factor 3, mitochondrial 135 353 IPR038538 -
Psa1g3466 374 Pfam mTERF 72 222 IPR003690 GO:0003690|GO:0006355
Psa1g3466 374 Pfam mTERF 237 341 IPR003690 GO:0003690|GO:0006355
Psa1g3466 374 PANTHER TRANSCRIPTION TERMINATION FACTOR FAMILY PROTEIN 14 368 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g3466 Psa-Chr1 300706176 300710373 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Psa1g3466 mTERF 9e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g3466 K15032 - gmx:102663414 348.591
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa1g3466 1 300706176 300710373 Psa1g3466 1 300706176 300710373 ECH