Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g3442 ATGGCATCTCCTGGTGTTGAAATTGCGTCTTCTTCACCGTTTGGTTGTGTTCTGAGAGATCGCAATCACCGCGATGGATATCGAGAGAAACATGGTGCTTTTCAGAGAAACATTAAGAACTTTGTTATGGATCATCTTAACACGTGCATTTCCATGTCTTCTGATTCTCAAACAACAAATGAAAACAACAACGAGGGTCAAATCAACAGCAACAAAACCAAAAACAAGGATGATGGTTCTTCTTGGGTTTCGAAACCTGGCAACAATCTTGCAAAGATTCGTTTGACAAGAAACAATCCCAATGATATTATCAACAACAACAAAGATGAATCGAGCTTGGCTTCGTTGATTAGCCCGAGGCATTCGCGGCTTCTTGATCGATGGGCTGCGAAGCAAGCTCGTGAGATGGTGTCGACGTTGGAGAATGAAGCTGAGTTGTTGTCGATAGACAACGTCAATGACGACATGCCTATTAGGACAACTAGTTCTACTACCTCTGATGAATGTTCTTCGGAGATACCGAACCTTGGTGCGTCTTCGCTTGTTCAGATATGGGAAAAAAGGCTTAACCAAACAAGTGTTTCTAAACCCAATACTCCAATGGAGAAAATAAGTCCAAATTGTGTTACAAGTGCGACTTGCAACAATGAGAATGTGTTTGTTGTGGTAGAACAAAGAGGGTCGGAAATTGGAGAGTGTCTTGAAGGGCAGTTATTAGGGAACGAAGAATTTTCTTCGTTCCCTGATTGGGAGTCTGATAAGACGGGTGACCAAAGTAGGTGGTGTTCGTCGGAGAGTGATAGAGTCAGTGTTGCTGATATCATAAAGAAACTCACTGCTACGAGCCAAACTCAGAGTCCAACTCCATATTTTGGGGATGAAAATGACAATGAAGGGTGTGGTGGTAATAGCAGTGTGGCATGTTCTCCTTGTAAAGATTCTGCACCAGAACTTTCAGACCAAAGAGCTGTTCCTCAGGTGACGTGTTCGCCACGAATTAGAGGGCGTCGAGTCTTCAATGATTTGTTTATGCAGTTGGAGAAAGATCGACATGGGGAGCTAAAGAACCTGGCCGAACGTGGAACTGTCTCCAAGTTCACACAAAGAGGTCGCATTCAGGCATTACTACGACATAAATCGTCACAACATGACGAGGCAGCTAATATTCTACCGGACCAGAAATCAACATCATCTGAAGTAAGCAAACAAGTACAATCACAGGGATCTGCAATTATGCAACTAAGGGAAAAATTTATCACTGGTGTGGAACAAAGAGGTACAGTTGAGGCAGAGGTAGCGAAGACACGAAATCCTCGCAAGGAGATAGGAAACAACATCACACAATTAGAAAACTCTTCCACCACTGATAAACTCAACAGAGACGCAAGCAGCGAGATTGCTCATGGAACTACGAGTCACGCCGTCGAATTGACTCAAAATTCGGTGTCTCTTACTAGAAAAAAAGATCAGCCAAGTTCAAATATCAAATCTCAAGAAACATGTTTTGAGGCTCATAATGAGTATGCCAAGGAAACTTCTGAGGCAGCTACGTCGATGACTGATTCAAATGTTAATGAGAAAGAGGAAGAGGAAATTAGCCAGCAATATGATGAAACCGGTTATGATTGTGCAGCAGATGAGGAGGGAAGTGACCAGAACTATGCTGAAAGCATTTGTGAAGAGATGGTGGATGAGAACTATGATGGAAATAGTTATGACTGGTTCAGCGAAATTTCTCGGCCGAGAAGCTATTGGGAAGAGCGAAGGCAGGCTTGGTATAAAGAGATGCAAGACACCGGTTCTCCAAAGAACGATATACAAGTGCTTCTTCAAAGAAGGACAGTGTCGACTTTCCTTTCGAGTGACTTCCGAGAAAAAATGGACAGATTGATGCATTCTCATAAGGGAACACAAACACATCTGGTCACTAGTCAGGACGACGAGATAGACAACGAAGCGCTGATGGCGTTTTTCAAAGAACACCTGCAACCTGAAAGAACTCCTCGAGAAAATGAAATAGAGAAAACCGTAAACGAGGAGGAAGAAGAAGAAGAAGAGAAGCAAGATGAGAAAGAGCATGAAGAGGAGCAAGGGGAGAGCTTGGTAAGCGATTCGTATCATGAAGTCGGAGACTTTTCAAATCAATCCTTATCATGGAGCTATAGAGACAATGAAGCTGGTGACGATTTCGATAGAGTTGCTTCTACATCATCACAACAACCTTATCAGTCTCCCTCTTTCTATCACGAAAATACTCAGCAAAACTCCCCGCCTATCAACCACCATTCGATCGAAATGGAAATCATATATAATATGAGAGGACACATGGAGCAACTTTATCAAGAAATGTCTGAACTAAGGAAATCAATAAAGAGTTGCATGGATATGCAGATGCAGATGCAGTTACAGGAAAAGAAGTCACATGACAAAGCTGATAAGAAAGATAACTGCTGCATTTGCAATGAGATGAAAGTTGACTCGGTTTTTTACAGGTGTGGACACATGTGTGCATGTCTGAAGTGTGCCAATGAGTTGCAATGGAAGAAAGGAAAATGTCCAATATGTAGGGCTAAAATAGACGATGTTGTTCGAGTGCATGTTGAAGCATAG 2610 0.4245 MASPGVEIASSSPFGCVLRDRNHRDGYREKHGAFQRNIKNFVMDHLNTCISMSSDSQTTNENNNEGQINSNKTKNKDDGSSWVSKPGNNLAKIRLTRNNPNDIINNNKDESSLASLISPRHSRLLDRWAAKQAREMVSTLENEAELLSIDNVNDDMPIRTTSSTTSDECSSEIPNLGASSLVQIWEKRLNQTSVSKPNTPMEKISPNCVTSATCNNENVFVVVEQRGSEIGECLEGQLLGNEEFSSFPDWESDKTGDQSRWCSSESDRVSVADIIKKLTATSQTQSPTPYFGDENDNEGCGGNSSVACSPCKDSAPELSDQRAVPQVTCSPRIRGRRVFNDLFMQLEKDRHGELKNLAERGTVSKFTQRGRIQALLRHKSSQHDEAANILPDQKSTSSEVSKQVQSQGSAIMQLREKFITGVEQRGTVEAEVAKTRNPRKEIGNNITQLENSSTTDKLNRDASSEIAHGTTSHAVELTQNSVSLTRKKDQPSSNIKSQETCFEAHNEYAKETSEAATSMTDSNVNEKEEEEISQQYDETGYDCAADEEGSDQNYAESICEEMVDENYDGNSYDWFSEISRPRSYWEERRQAWYKEMQDTGSPKNDIQVLLQRRTVSTFLSSDFREKMDRLMHSHKGTQTHLVTSQDDEIDNEALMAFFKEHLQPERTPRENEIEKTVNEEEEEEEEKQDEKEHEEEQGESLVSDSYHEVGDFSNQSLSWSYRDNEAGDDFDRVASTSSQQPYQSPSFYHENTQQNSPPINHHSIEMEIIYNMRGHMEQLYQEMSELRKSIKSCMDMQMQMQLQEKKSHDKADKKDNCCICNEMKVDSVFYRCGHMCACLKCANELQWKKGKCPICRAKIDDVVRVHVEA* 870
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g3442 869 MobiDBLite consensus disorder prediction 54 91 - -
Psa1g3442 869 CDD mRING-HC-C3HC5_NEU1 816 856 - -
Psa1g3442 869 MobiDBLite consensus disorder prediction 378 399 - -
Psa1g3442 869 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 792 868 IPR013083 -
Psa1g3442 869 Coils Coil 130 150 - -
Psa1g3442 869 Coils Coil 670 699 - -
Psa1g3442 869 Coils Coil 776 796 - -
Psa1g3442 869 MobiDBLite consensus disorder prediction 676 692 - -
Psa1g3442 869 MobiDBLite consensus disorder prediction 734 755 - -
Psa1g3442 869 SUPERFAMILY RING/U-box 816 861 - -
Psa1g3442 869 PANTHER BNAC05G24000D PROTEIN 1 868 - -
Psa1g3442 869 MobiDBLite consensus disorder prediction 466 501 - -
Psa1g3442 869 MobiDBLite consensus disorder prediction 466 533 - -
Psa1g3442 869 ProSiteProfiles Zinc finger RING-type profile. 817 856 IPR001841 -
Psa1g3442 869 MobiDBLite consensus disorder prediction 660 707 - -
Psa1g3442 869 PANTHER BNAC05G24000D PROTEIN 1 868 - -
Psa1g3442 869 Pfam Zinc finger, C3HC4 type (RING finger) 814 862 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g3442 Psa-Chr1 299198172 299202600 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g3442 809 865 C3H Transcription Factor Family AT3G06140 35.088 6.90e-07 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g3442 - - mtr:MTR_2g437720 1117.06