Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g3439 ATGGCAACAACAATGAAAACATTACTAACACTTTCACTTCTCTTGTGTTTCTTCTCTTCTATTTTACTAGTCCTTTGTAGTGAAAATGAGATAGTAATGACTAAAAAAGTGCTTTTGGAGGTTAAGTCTTCTTTTCTGAATGACCCTGAAAATGTTTTGGGGAATTGGTCGGAGGATAATAACACTGATTATTGTACTTGGAGAGGTGTTTCATGTGACTTGTCGCAGGTTGTGGTTGGACTCAACCTGTCTGACTCGAAACTCACTGGGTCAGTTTCATCTTCACTCGGTCTTTTACAAAACCTACTCCACCTTGATCTTTCAGCTAATCATCTTATGGGTCCCATTCCACCTTCTCTCTCAAATCTCACTAAATTAGAATCTTTGCTTCTTTATTCAAACCAACTAACTGGTCAAATTCCAAACGAGTTGGGTTCGTTAGCGAGTCTCCGAGTTTTGAGAATCGGTGACAATGAACTCACTGGCGAAATTCCATCTTCTTTGGGTAATCTTGTTAACCTTGTTGTCCTTGGTTTAGCTTCATGCAAACTCACCGGTTCGATTCCAACTCAACTCGGTCGACTCAATGAGTTGCAAAATTTGATTTTGCAAGACAACGAGTTAACAGGTCCGATTCCGTCCGAGTTGGGAAACTGTACAGGCCTCATCCGCTTCACTGCTTCTGACAACAAACTCAACGGCACAATTCCGAGTCAACTGGGTCAGCTCAGAAACCTCCAAATTCTCAACCTTGCAAACAATAGCTTAACTGGGGAGATTCCGAGTCAACTCGGTCAAATGAACGAGCTTAATTATCTCAGTTTAACAGAAAACAACCTGGAGGGTCACATTCCACCGTCTTTATCGCAAATGGGTAACCTTCAAAATCTTGACTTGTCCGTGAACAAACTCAGTGGAGGAATTCCAGAAGAATTTGGTAACATGCATCAGTTGAAATTCTTAGTTCTTTTTGGAAACCCTTTAAGTGGAAGAATTCCGAAAAAGTTATGTTCCAATGCAACAAATTTGGAGCATTTATTGATATCGATGAATGGTCTTTATGGTGAGATTCCATCTGAATTGAGTCAATGCAAGTCATTGAAGCAAATTGATTTATCCAACAATTTTCTCAATGGAACAATTCCTCTTGAGATTTATGGTTTGGTGAACATAACAGATCTTTTGCTTCACAACAATAGTTTAATTGGTTCAGTTTCACCTTTCATAGGGAACTTAACAAATTTGAAAACACTTGCATTGTATCATAACAAGTTGCATGGTGCTTTGCCTAAAGAGATTGGGATGCTTGGAATGATGGAAATTTTGTATCTTTATGATAATCAATTTTCGGGGAATATACCTAATGAGATTGGTAATTGCTCAAATTTGAAAATGGTTGATTTCTTTGGTAACCATTTTGGTGGAAGAATTCCGATTACGATTGGAAGATTGAAAGAGTTGAGTTTTCTTCATATTAGACAGAATGAGCTTGTTGGTGAGATTCCGGCTACCCTTGGGAACTGTCATAAACTGACTGTGCTTGATTTGGCGGATAATAACCTCTCCGGTGGAATTCCTGCAACATTCGGGTATCTCAAAGATTTGCAGCAGTTCATGCTTTACAACAATTCTCTTGAAGGTGGTATTCCTCGTCAAATGGCGAATGTGGCAAACTTGACAAGAGTTAATCTTTCAAAGAACAGATTGAATGGAAGTTTGGCTCCATTGTGTAGCTCTAGAGATTTTCTTTCTTTTGATGTTACAGGTAATGAATTTGATGGTGAAATTCCTTCAAACTTGGGAAACTCTATGTCCCTCAAGAGACTAAGATTAGGAGATAACAGGTTTTCTGGTGAAATTCCGAGGACGTTGGGAAAAATCGTTGATCTGTCTTTGTTAGATCTCTCAGGAAATTCTCTCACAGGGCCGATACCAGGTGAACTATCTCTGTGTAACAAACTTTCCTTTGTTGATTTAAGCGATAACCTTCTTTTTGGTCACATACCGATGTGGCTTGGGAATTTGCCTAGTTTAGGAAAGCTTAATCTTGCATTCAATCAATTTTCCGGGCCTTTTCCGCTAGGCCTATTGAAATTACCTACATTGTTGGTTCTTTCTTTGAATAACAATTCTCTTAATGGAAGTCTCCCGGATGGTATTGGCGATCTCAATTCGCTTAATGTCCTTAGACTTGATCGTAATAATTTTTCTGGACCGATCCCTCACGCAATAGGTAAGTTGGGAAATCTTTATGAGCTCAATCTATCCAGAAATGTCTTTAGTGGTGACATACCAAATGAGATTGGAAATCTTCAAAATCTCCAAATTGTTTTGGACTTAAGTTGCAATAATCTCTCTGGCCAGCTTCCTTCTTCTCTTGGTTCGTTATCGAAATTAGAAGCACTTGATTTGTCTCACAACCAACTCACAGGCGAAGTTCCTCGATCCATTGGTGAAATGATTAGCTTGGATAAGCTTGATATCTCTTATAATAATTTTCAAGGTGCATTGGATAAGCGATTCTCTCGCTGGCCGTACGCGGCCTTTGTAGGGAACTTTCATCTATGTGGAGCCTCTTTCCGTAGCTGCAACCGTGGTGGTTCTTCCCAAAATAAGCTAGCAGGGTTAAGCGAGAAAGCCGTGGTCGTAATCTCTGCGATTTCAACTCTAGCTGCAATTGTGATACTTGTTGTTGCAGTGAAAATCTTCTTGAGAAATAGGCAATATTTTTCGAACAAAGATAGGGAATTAGCCTGTGTTTTCTCTTCCTCTACATCACAAGCAAAAAAACGGCTTCTGTTCCCCGTAAGTACAGCCGGAAAACGAGATTTCAAGTGGGAAGACATCATGGCTGCTACGAACAATTTGAGGGACGAATTCATAATTGGTGCTGGAGCTTCCGGAACTGTCTACAGAGTTGAATTACCTACCGGCGAAACCGTGGCTGTCAAGAAGATCTCACTGAAAGATGAATATCTTTTGCATAAAAGCTTTATAAGAGAAATAAAGACTTTGGGCAGGATTAAGCATCGGCATTTGGTGAAACTGGTTGGTTGTTGTAGCAATAGAAACAAAGGAAATGGTTGTAATCTGTTGATATACGAGTACATGGAAAACGGAAGCGTTTGGGATTGGTTACATGGAAATGCTCTAAAGTTAAAGAGGAACCTTGATTGGGAAACAAGGTTCAAAATTGCTTTAGGGTTAGCTCAAGGAATGGAGTATCTTCACCACGATTGCGTGCCAATGCTCATTCACAGGGACATCAAATCCAGCAATATTTTGTTAGATTCTAAAATGGATGCACACTTGGGAGATTTCGGATTGGCAAAAGCACTCATCGAAAATCATGATTCTAATACCGAATCTACTTCCTGTTTTGCAGGCTCTTATGGTTACATAGCTCCAGAGTTTGGATACTCGCTAAAGGCGACAGAGAAAAGTGATATTTACAGCATGGGAATTGTGCTAATGGAACTTGTGAGTGGCAAAATGCCAACAGATGAAGCTTTTAGGACAGGTATAGACATGGTGAGATGGGTGGAGAGGCACATCGACACGAAAGGAACCGAACGCGAGGAACTAATAGATCCGGAGCTAAAACCGCTTTTACCTTTTGAAGAGTTTGCAGCATTTCAAGTGCTTGAGATAGCTTTGCAATGCACTAAAACTACACCAATGGAGAGACCAACATCAAGGCATGTTTGTGATCTTCTTCAACATGTGTCCAAGAACAAAAAAGTGGAGTTTAAGAAGATGAAATTGGATGCTTACGACGAGTGA 3783 0.3992 MATTMKTLLTLSLLLCFFSSILLVLCSENEIVMTKKVLLEVKSSFLNDPENVLGNWSEDNNTDYCTWRGVSCDLSQVVVGLNLSDSKLTGSVSSSLGLLQNLLHLDLSANHLMGPIPPSLSNLTKLESLLLYSNQLTGQIPNELGSLASLRVLRIGDNELTGEIPSSLGNLVNLVVLGLASCKLTGSIPTQLGRLNELQNLILQDNELTGPIPSELGNCTGLIRFTASDNKLNGTIPSQLGQLRNLQILNLANNSLTGEIPSQLGQMNELNYLSLTENNLEGHIPPSLSQMGNLQNLDLSVNKLSGGIPEEFGNMHQLKFLVLFGNPLSGRIPKKLCSNATNLEHLLISMNGLYGEIPSELSQCKSLKQIDLSNNFLNGTIPLEIYGLVNITDLLLHNNSLIGSVSPFIGNLTNLKTLALYHNKLHGALPKEIGMLGMMEILYLYDNQFSGNIPNEIGNCSNLKMVDFFGNHFGGRIPITIGRLKELSFLHIRQNELVGEIPATLGNCHKLTVLDLADNNLSGGIPATFGYLKDLQQFMLYNNSLEGGIPRQMANVANLTRVNLSKNRLNGSLAPLCSSRDFLSFDVTGNEFDGEIPSNLGNSMSLKRLRLGDNRFSGEIPRTLGKIVDLSLLDLSGNSLTGPIPGELSLCNKLSFVDLSDNLLFGHIPMWLGNLPSLGKLNLAFNQFSGPFPLGLLKLPTLLVLSLNNNSLNGSLPDGIGDLNSLNVLRLDRNNFSGPIPHAIGKLGNLYELNLSRNVFSGDIPNEIGNLQNLQIVLDLSCNNLSGQLPSSLGSLSKLEALDLSHNQLTGEVPRSIGEMISLDKLDISYNNFQGALDKRFSRWPYAAFVGNFHLCGASFRSCNRGGSSQNKLAGLSEKAVVVISAISTLAAIVILVVAVKIFLRNRQYFSNKDRELACVFSSSTSQAKKRLLFPVSTAGKRDFKWEDIMAATNNLRDEFIIGAGASGTVYRVELPTGETVAVKKISLKDEYLLHKSFIREIKTLGRIKHRHLVKLVGCCSNRNKGNGCNLLIYEYMENGSVWDWLHGNALKLKRNLDWETRFKIALGLAQGMEYLHHDCVPMLIHRDIKSSNILLDSKMDAHLGDFGLAKALIENHDSNTESTSCFAGSYGYIAPEFGYSLKATEKSDIYSMGIVLMELVSGKMPTDEAFRTGIDMVRWVERHIDTKGTEREELIDPELKPLLPFEEFAAFQVLEIALQCTKTTPMERPTSRHVCDLLQHVSKNKKVEFKKMKLDAYDE* 1261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g3439 1260 Gene3D Ribonuclease Inhibitor 478 576 IPR032675 -
Psa1g3439 1260 Gene3D Ribonuclease Inhibitor 290 369 IPR032675 -
Psa1g3439 1260 PRINTS Leucine-rich repeat signature 630 643 - -
Psa1g3439 1260 PRINTS Leucine-rich repeat signature 796 809 - -
Psa1g3439 1260 Gene3D Ribonuclease Inhibitor 577 866 IPR032675 -
Psa1g3439 1260 Gene3D Ribonuclease Inhibitor 188 289 IPR032675 -
Psa1g3439 1260 Pfam Protein kinase domain 961 1236 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa1g3439 1260 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE GSO1 4 1255 - -
Psa1g3439 1260 ProSitePatterns Protein kinases ATP-binding region signature. 962 985 IPR017441 GO:0005524
Psa1g3439 1260 SUPERFAMILY L domain-like 284 592 - -
Psa1g3439 1260 Gene3D Ribonuclease Inhibitor 370 477 IPR032675 -
Psa1g3439 1260 Pfam Leucine rich repeat N-terminal domain 36 73 IPR013210 -
Psa1g3439 1260 SUPERFAMILY L domain-like 579 851 - -
Psa1g3439 1260 SUPERFAMILY L domain-like 38 333 - -
Psa1g3439 1260 Gene3D Phosphorylase Kinase; domain 1 918 1036 - -
Psa1g3439 1260 ProSiteProfiles Protein kinase domain profile. 956 1244 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa1g3439 1260 SMART LRR_typ_2 412 436 IPR003591 -
Psa1g3439 1260 SMART LRR_typ_2 123 146 IPR003591 -
Psa1g3439 1260 SMART LRR_typ_2 147 171 IPR003591 -
Psa1g3439 1260 SMART LRR_typ_2 99 122 IPR003591 -
Psa1g3439 1260 SMART LRR_typ_2 484 508 IPR003591 -
Psa1g3439 1260 SMART LRR_typ_2 699 723 IPR003591 -
Psa1g3439 1260 SMART LRR_typ_2 243 267 IPR003591 -
Psa1g3439 1260 SMART LRR_typ_2 195 219 IPR003591 -
Psa1g3439 1260 SMART LRR_typ_2 796 820 IPR003591 -
Psa1g3439 1260 SMART LRR_typ_2 291 314 IPR003591 -
Psa1g3439 1260 SMART LRR_typ_2 747 771 IPR003591 -
Psa1g3439 1260 SMART LRR_typ_2 315 339 IPR003591 -
Psa1g3439 1260 Pfam Leucine rich repeat 510 569 IPR001611 GO:0005515
Psa1g3439 1260 Pfam Leucine rich repeat 269 328 IPR001611 GO:0005515
Psa1g3439 1260 Pfam Leucine rich repeat 778 833 IPR001611 GO:0005515
Psa1g3439 1260 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 4 1255 - -
Psa1g3439 1260 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1084 1096 IPR008271 GO:0004672|GO:0006468
Psa1g3439 1260 SMART serkin_6 956 1244 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa1g3439 1260 Gene3D Ribonuclease Inhibitor 33 187 IPR032675 -
Psa1g3439 1260 Gene3D Transferase(Phosphotransferase) domain 1 1037 1259 - -
Psa1g3439 1260 Pfam Leucine Rich Repeat 245 263 IPR001611 GO:0005515
Psa1g3439 1260 SUPERFAMILY Protein kinase-like (PK-like) 934 1239 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g3439 Psa-Chr1 299155885 299160535 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g3439 568 837 Receptor kinase-like Gene Family AT1G73080 33.444 1.35e-32 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Psa1g3439 Pkinase 4.4e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g3439 - - gmx:100801889 1696.4