Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g3421 ATGGCTTCTTCTTTTCCTGTTTATCAACTAGCGCCTTGTTTCTTCTCAAAAACCCAGTTCCAAGGTTTGCACCATAGCTATTTGTGGCGACCCACTTACTTGTTTGGCTCTTGTGCTCAAAACAAACTACGACCTGTTAAAGCTTCGGTTGAAGCAGCCCCATTTCCCTTGTTTCAGCCTCCCACAGCTGAAGACCCATCTTCTGAGTTGGAGCCTGTGGATCCTGATTTCTACAGGATAGGATATGTCCGAAGCATGCGAGCTTATGGAGTTGATTTTAGGGAAGGACCAAATGGTTTTGGTGTGTATGCTTCTAAAGATGTTGAACCTCTTCGCCGACCAAGGGTTATAATGGAAATTCCTCTTGAATTGATGCTAACGATAAGCAAGAAGCTTCCATGGATGTTTTTCCCTGATATAATTCCCCTTGGTCATCCGATATTTGATATTATCAACTCGACAAATCCAGAGACAGATTGGGATTTAAGATTAGCCTGCCTTCTCTTGTTTTCATTCGACTGCAAAGACAACTTTTGGCAGTATTACGGTGATTTCTTACCAAGTGCAGATGAAAGTACTAGCTTACTTCTAGCTTCAGAGGAGGAACTTTTGGAGCTGCAGGATCCCGATCTTGCTTCTACAATTAGAATTGACCAACAACGAGTTTTAGATTTCTGGGAGAAGCACTGGCATATCGATGCGCCCCTAAAAGTGAAACGTCTTGCTCGTGATCCTAAAAGGTTCACTTGGGCCGTGGGAATTGCACAGTCAAGATGTATCAACATGCAAATGAGAATGTGTGCACTAACTCAGGATGCAAATATGCTGATTCCTTATGCCGATATGCTGAACCATTCATTTGAGCCAAATTGTTTTTTCCATTGGCGGTTCAAGGACAGGATGCTTGAGGTTCTTATAAATGCTGGACAACAGATTCGAAAAGGAGACGAGATGACAGTTGATTACATGAGTGCACAGAAGAGTGACATCTTAATGCAAAGATACGGATTTTCCTCGCCGGTGAATCCTTGGGATGTGATCAAATTCTCGGGAAATGCACAAATCCATTTGGATTCCTTCTTGTCAGTTTTCAACATATCAGGCCTTCCTGAAGAGTATTATCGTAACGAAGTTCTATCGAATGCTGGAGATACTTTTGTTGATGGAGCAGTCATAGCCGCGGCGCGAACATTGCCAACATGGTCAGCTGGAGATGTGCCTCCAATCCCAAGTGAAGAAAGAAAGGCTGCAAAGGCAATACAACAAGAGTGCAAACAAATGCTTGGAAAATTTGCTACCACCTCTAAGCAAGACCAGAAATTATTAGATTCTTCACCGGAAGCCACGAGATTGCTAGAAGCTGCAATAAAGTATAGATTGCACAGGAAATTGTTAATGGAAAAAGTTATCCTTGCATTGGAGATCTATCAAGAGCAATTACTGTTCTGA 1449 0.4244 MASSFPVYQLAPCFFSKTQFQGLHHSYLWRPTYLFGSCAQNKLRPVKASVEAAPFPLFQPPTAEDPSSELEPVDPDFYRIGYVRSMRAYGVDFREGPNGFGVYASKDVEPLRRPRVIMEIPLELMLTISKKLPWMFFPDIIPLGHPIFDIINSTNPETDWDLRLACLLLFSFDCKDNFWQYYGDFLPSADESTSLLLASEEELLELQDPDLASTIRIDQQRVLDFWEKHWHIDAPLKVKRLARDPKRFTWAVGIAQSRCINMQMRMCALTQDANMLIPYADMLNHSFEPNCFFHWRFKDRMLEVLINAGQQIRKGDEMTVDYMSAQKSDILMQRYGFSSPVNPWDVIKFSGNAQIHLDSFLSVFNISGLPEEYYRNEVLSNAGDTFVDGAVIAAARTLPTWSAGDVPPIPSEERKAAKAIQQECKQMLGKFATTSKQDQKLLDSSPEATRLLEAAIKYRLHRKLLMEKVILALEIYQEQLLF* 483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g3421 482 PANTHER UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE 50 472 - -
Psa1g3421 482 CDD SET_LSMT 90 337 - -
Psa1g3421 482 SUPERFAMILY SET domain 97 338 IPR046341 -
Psa1g3421 482 Pfam SET domain 99 322 IPR001214 GO:0005515
Psa1g3421 482 Gene3D set domain protein methyltransferase, domain 1 83 337 - -
Psa1g3421 482 ProSiteProfiles SET domain profile. 78 323 IPR001214 GO:0005515
Psa1g3421 482 Pfam Rubisco LSMT substrate-binding 411 463 IPR015353 -
Psa1g3421 482 SUPERFAMILY RuBisCo LSMT C-terminal, substrate-binding domain 334 474 IPR036464 -
Psa1g3421 482 PANTHER PROTEIN PLASTID TRANSCRIPTIONALLY ACTIVE 14 50 472 - -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Psa1g3421 SET 3.1e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g3421 - - cam:101505820 864.374