LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Psa1g3410	ATGCCGACATACCATGTCAGGGGAGTCGACGTAGATTTCCCATATGAAGCCTATGATTCTCAGCTCGTTTACATGGATAAAGTCATGCAATCGCTTCAGAAGGAAAAATGCGTTGTTGGAGAGTCCCACAGGAATCAGAAAAACAATGTGTCTTCTGTGTGCTACTTTAGCCTGACAGAAGAGTTTGGACAATTTCACAACTGTCAGATACGTCAAGTTATTCAAGAGTTGAAACAAACATCTTATAAACCTAAGATGACAGTTCTTGGTTCTCGGGAGCAACTTTGCATTCATAAAAAAAAAGCGAAGTCACTTCACAGAAAAACACAAACAGATGCTTGTCGATCTGCCTGTCGAAGGCGTGCAAAGCCAAAGCATCAACGTAACCATTTCCAAAATGTTCCTGAGTATTTGAAACACAAACCTAATCTTGGAGAAGAGCCCGTGGATATTGAGGATTTGAAGTTCGTGCTCAACAGCAAACAATTCAAAACAGACCGACTTCCTCCACCACACTCTAGAGATCATCCTATGACAGCAATTCCAATTGAAGTGGACTCAGTGGGAGATGGCAATGAATTTCACTTCACACCTGAAGACTTGGATCCTCTTCCGGTGCAAGAACGTTTTGAGCTTGGATACAGGGATTATATACAGTCACCTTTACAACCTTTGATGGATAATTCGGAGGCTCGTACTTATGAGACTTTTGAGAAAGGCGAACACGCAAAAGAGATCATGGAAACATTTATAGACGGTGCTTCTCCATTTACAGAAATTGCCTCTGTCCAGATTAAACGAGAGTGTACAACAGTTTGCAGTCATTCGAGAATGGAATCGGAATTGGTGCAAGTCGCAGCAGAGTTAACAAAAGTGGTTCAGTCTCTTCCTTCCGACGCCGTTAACCACCTGTTCTCCCTCGGGTTATGTGTGCACTGCATCTTCCGTGTATTCGGTGTTCAAGCCAACACCATCTATGCTTCTCCGCCGCTATCACCCACCATATTCACTTTTCAACCACCAACAGATAAACTCTGCACCATCTGCTTAGGTATCCTTCAGTTCAGATTTCGCAATGACGAACAACGTACTAAGTCAACATTGCCACCACCGTTAACCGGAGAAGCGAACATGGTAGGTTTCAACTCTCGGTCGTCCTACGGTATGCAATCCATGCTCAAAGAAGGTCACAAGCATCTCTCCGGTCTCGATAAAGCCGTTCTCAAAAACACCGATGCCTGTAACCAACTCTCTACCATCACTCGCACTTCCTTCGACCCCAACGGAATGAATGAGATGGTTACAAATCATTTGGATAAACTTTTTGTGATGAATGATGCTGCTACGATTGTGAATGAACTTGAAGTTCAACATCCTGCTACTAAGGTTTTGGTGTTGGCTAGTAAGGCTCACTCCTTGTCGGAAACAGAAAGACCTCAGGGAGATTCTTTTGAACCATTGACTGTCAAGCAGGGGAAGAAACACATTAGCACACCCGTTCCTCATGATTCATACTCGGTTCTTCCTGTAAGCAGTTCAGGAAAGTATTTAGCAATCGTATGGCCAAATATTCCTTATTTCTCTGTCTACAAGGTCAGCGATTGGTCAATTGTTGACTCTGGCAATGCAAGGCTTCTTGCTTGGGATGCTTGTTGTGACAGATTTGCTATATTGGAATCATCATTACCTCCCGAGCTAGGTAATATGTCTAAACTGAGCTACCTGCAATTGAATGATAATCAACTGGATCCATATGCCGTCTATATCTCCCCAAAATCAAGAGAGATATTTTTTAGAGTTGCAGTCGCATTGTCTCATTCTCGGTATCATCGTGTTACAGGCTATGACGACTCTCTTTGGGATCTTCTACATGGTCCGCTGAAGGTAAAACTTGATTGGGAAACACGGATGAGGATTGTTGTTGGAGCTGCTGAAGGACTTGCTTATCTTCACCATGACTGCAACCCTCGAATTATTCACAGGGACATTAAGTCTTCAAATATTTTGCTGGATGAAAGCTGTGAAGCTCATCCTTCTGATTTTGGCACTGCAAAATGCATCCCAGCCACAAGAACTCATGCCTCAACCTATGTCTTTGGAACTATATGCTATATTGATCCTGGATATGCACAAACTTCTTGGCTGAATGAGAAATCAGATGTATATAGCTTTGGCATCGTTCTGCTAGAGCTACTCACTGGGAAGAAGGCAGTAGATGATGATAGCCAAATGTCTAGCAAATCAACACCATTTCATCAGATCGAGGTGGGCCTTTAA	2277	0.4308	MPTYHVRGVDVDFPYEAYDSQLVYMDKVMQSLQKEKCVVGESHRNQKNNVSSVCYFSLTEEFGQFHNCQIRQVIQELKQTSYKPKMTVLGSREQLCIHKKKAKSLHRKTQTDACRSACRRRAKPKHQRNHFQNVPEYLKHKPNLGEEPVDIEDLKFVLNSKQFKTDRLPPPHSRDHPMTAIPIEVDSVGDGNEFHFTPEDLDPLPVQERFELGYRDYIQSPLQPLMDNSEARTYETFEKGEHAKEIMETFIDGASPFTEIASVQIKRECTTVCSHSRMESELVQVAAELTKVVQSLPSDAVNHLFSLGLCVHCIFRVFGVQANTIYASPPLSPTIFTFQPPTDKLCTICLGILQFRFRNDEQRTKSTLPPPLTGEANMVGFNSRSSYGMQSMLKEGHKHLSGLDKAVLKNTDACNQLSTITRTSFDPNGMNEMVTNHLDKLFVMNDAATIVNELEVQHPATKVLVLASKAHSLSETERPQGDSFEPLTVKQGKKHISTPVPHDSYSVLPVSSSGKYLAIVWPNIPYFSVYKVSDWSIVDSGNARLLAWDACCDRFAILESSLPPELGNMSKLSYLQLNDNQLDPYAVYISPKSREIFFRVAVALSHSRYHRVTGYDDSLWDLLHGPLKVKLDWETRMRIVVGAAEGLAYLHHDCNPRIIHRDIKSSNILLDESCEAHPSDFGTAKCIPATRTHASTYVFGTICYIDPGYAQTSWLNEKSDVYSFGIVLLELLTGKKAVDDDSQMSSKSTPFHQIEVGL*	759

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Psa1g3410	758	Pfam	PRMT5 arginine-N-methyltransferase	207	242	IPR035075	-
	Psa1g3410	758	ProSiteProfiles	Protein kinase domain profile.	505	758	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Psa1g3410	758	PANTHER	LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE ERL1-RELATED	559	582	-	-
	Psa1g3410	758	PANTHER	LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE ERL1-RELATED	617	745	-	-
	Psa1g3410	758	Gene3D	-	383	474	IPR027413	-
	Psa1g3410	758	Pfam	TCP-1/cpn60 chaperonin family	417	472	IPR002423	GO:0005524
	Psa1g3410	758	Gene3D	-	16	165	IPR027417	-
	Psa1g3410	758	PANTHER	LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED	617	745	-	-
	Psa1g3410	758	PANTHER	LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED	559	582	-	-
	Psa1g3410	758	Pfam	DEAD_2	69	158	IPR010614	GO:0003677\|GO:0003678\|GO:0005524
	Psa1g3410	758	SUPERFAMILY	GroEL equatorial domain-like	399	472	IPR027413	-
	Psa1g3410	758	Gene3D	Transferase(Phosphotransferase) domain 1	616	755	-	-
	Psa1g3410	758	Pfam	Protein kinase domain	617	753	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Psa1g3410	758	Gene3D	Vaccinia Virus protein VP39	198	254	IPR029063	-
	Psa1g3410	758	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	658	670	IPR008271	GO:0004672\|GO:0006468
	Psa1g3410	758	SMART	serkin_6	535	752	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Psa1g3410	758	SUPERFAMILY	Protein kinase-like (PK-like)	617	745	IPR011009	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Psa1g3410	Psa-Chr1	298044006	298048270	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Psa1g3410	616	744	Receptor kinase-like Gene Family	AT5G62230	78.462	2.76e-60	218

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_LRR-XIIIb	Psa1g3410		Pkinase	2.7e-20	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Psa1g3410	K20718		-	gmx:100811653	227.254