Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g3405 ATGGCAGAAATTCACACACAAACTCCAACAATCAGTCCCACAACAAGCAAACCATGTAACAATTCTCCACAACAACATAGTCTCAATTCAGTGATTCTTATAGCAGCAATAGTGTGTGCTTTACTATGTGCTCTTGGTCTCAACACAATGCTACAATGTGTGTTCCAATGCGCGAACCGTGTCCTTACCGAACCTCTCCAATGGATCGCTTCTCGAAGGCGCAATTCGGGACTCAAGAAGAAAGATAGAGTTGCTTTGCCAACATCAGTTTATACTGCTCATTCAGGTGGATCATCATCAACTCCTCAAACTATGGATTCTAATTGTGCTATTTGCTTAGCTGAGTTTTGTGATGGTGATAATATGAAGTTGCTACCAAAGTGTAATCATCGTTTTCATGTGGTTTGTATTGATAAGTGGTTGCTTTCTCATTCTTCTTGTCCTACTTTGATGATGAGCCACTGCGAGGAGTTAGGTCATGACGACATCATTCTCGAGGCTTAA 504 0.4127 MAEIHTQTPTISPTTSKPCNNSPQQHSLNSVILIAAIVCALLCALGLNTMLQCVFQCANRVLTEPLQWIASRRRNSGLKKKDRVALPTSVYTAHSGGSSSTPQTMDSNCAICLAEFCDGDNMKLLPKCNHRFHVVCIDKWLLSHSSCPTLMMSHCEELGHDDIILEA* 168
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g3405 167 PANTHER RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED 12 149 - -
Psa1g3405 167 PANTHER OS06G0666500 PROTEIN 12 149 - -
Psa1g3405 167 MobiDBLite consensus disorder prediction 1 20 - -
Psa1g3405 167 Pfam Ring finger domain 108 149 IPR001841 -
Psa1g3405 167 ProSiteProfiles Zinc finger RING-type profile. 109 148 IPR001841 -
Psa1g3405 167 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 67 154 IPR013083 -
Psa1g3405 167 SMART ring_2 109 150 IPR001841 -
Psa1g3405 167 SUPERFAMILY RING/U-box 105 149 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g3405 Psa-Chr1 297812023 297814121 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g3405 11 149 C3H Transcription Factor Family AT3G10910 37.419 3.18e-28 101
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g3405 - - gmx:100803003 212.231