Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g3402 ATGGCGTCCGGTGATGTGAGAGACTTACAGCTCACTTTTCTACCCGCCGGCCGGAAAATTTCCGCCACCGATGACTCCGATGACTTGGAAAACGCACGGCTCCTTGACTCCCGCGACGGAATTGACGATGAGAGAAGAAGAATTCAGGTGAGAATCTCCGGCATGACATGCAGCGCTTGCTCGAATTCCATCGAATCAGCTCTGAAAGCCGTTGACGGAGTTCTCAGTGCTTCGGTTGCTCTACTGCAGAACAAAGCAGACGTAGTTTTCAACCCCGCTCTACTTAAGGATGAAGACATTAAAAATGCAATTGAAGATGCAGGGTTTGAAGCAGACATATTACCCGAATCCAGTGGACTTGGAAATACTCCACATGAAACCCTGGTTGGACAGTTCACAATTGGAGGTATGACATGTGCAGCCTGTGTAAATTCTGTTGAGGGTATTTTAAGAAATCTTCCAGGGGTTAAAAGGGCCGTGGTAGCTTTGGCTACTTCGTTAGGCGAAGTCGAATATGATCCAAGTGTAATTAGTAAAGATGATATAGTCAATGCAATCGAAGATTCTGGCTTTGAAGCCTCGTTTGTACAGAGCAATGAGCAGGATAAAATCATTTTTGGAGTTGTTGGTGTGTACAGTCTAATAGACGCGCAAACTATAGAAGACATGCTTAGTAACATGAAAGGAGTAAGACAATTTTGTTTTGACCGGATATCGGGTGAATTAGATGTTCTGTTCGATCCTCAAGTTCTCAGTCCAAGGTCCTTAGTTGATGGGATCCACGAGGAAAATGGAAAGTTTGAATTACATGTTAAAAGCCCTTATACGAGGATGGCCTCTAAAGATGTTGAAGAAACCTCAAATATATTTCGTGTCTTTATCTCCAGCCTGTTACTTAGTGTTCCTCTCTTCTTCATGAAGGTAGTTTGTCCTCATATTCCATTTATGTATTCATTGTTACTTCGGCGACTTGGGCCTTTTCTCATGGGTGATTGGGTGAAATGGGCATTGGTGAGTGTCATCCAATTTGGAATTGGGAAGCGCTTTTATATTGCAGCTGGAAGGGCTCTTAGAAATGGTTCAACTAACATGGATGTCTTGATTGTTGTGGGAACTACCACCTCTTACGTTTATTCTGTTTACGCTCTTCTATATGGCGCTCTTACTGGATTTTGGTCCCAAACTTACTTTGAAACAAGTGCTATGCTTATAACATTTGTTTTGTTGGGGAAGTATTTGGAAGTCCTTGCTAAGGGAAAGACGTCTGATGCCATCAAGAAATTAGTAGAACTTGCTCCTGCAACAGCTTTATTAATTATTAATGATAAAGATGGTAAGTCTTTTAAAGAAAGAGAAATTGATTCTTTACTTGTTCAACCTGGTGACACATTGAAAACTCTTCCTGGAACAAAGATTCCTGCTGATGGTATTGTTACTTGGGGCTCAAGTTATGTAAATGAGAGCATGGTAACCGGTGAATCTGTACCTGTTTTGAAGGAGGTGAATGCTTCTGTTATTGGGGGTACGATAAATATGCATGGCGTCCTTCACATTAAAGCTACTAAAGTAGGATCTGATACAGTTTTGAGCCAAATAATAAGTTTGGTCGAAACAGCGCAGATGTCCAAAGCTCCCATTCAGAAGTTTGCTGATTATGTAGCAAGCATATTTGTTCCGACCGTTGTTTCTTTGGCCTTATTGACATTTTTGGGTTGGTATATTGCTGGAGCTGTTGGAGCTTACCCAGAAGAATGGCTGACTGAAAATGGAAATCACTTTGTGTTTGCCCTAATGTTCTCAATATCTGTAGTGGTGATTGCATGTCCCTGTGCACTTGGCTTAGCAACACCAACAGCTGTCATGGTGGGAACAGGGGTTGGGGCTAACAATGGTGTATTAATTAAAGGAGGAGATGCCTTGGAAAGGGCTCAAATGGTGAAGTATGTGATATTTGATAAAACAGGCACTCTAACTCAGGGAAAAGCCAGTGTTACTTCTGCCAAGGTATTCACTGGAATGCAACGAGGGGAATTTCTTACATTGGTGGCTTCTGCTGAGGCTAGCAGTGAACACCCACTAGCAAAAGCAGTATTAGCATATGCACGCCATTTTCATTTCTTTGATGATTCTTCAGCTACTACAGAGAATGATGTGAAGTCTGGGTGGCTTTTTGATGTCACGGACTTCTCTGCTCTCCCAGGAAGAGGTGTTCAATGCTCTATAAAGGGGAGGCATATTTTGGTTGGCAACAGAATGTTGATGTTGGAAAATGATATTGATATTTCAAAAGAAGTGGAAAATTTTGTTGCTGAGCTTGAGCAAAAAGCGCAGACAGGGATACTAGTATCATATGATAATATATTGATCGGAGCTTTGGGGGTGGCAGACCCACTAAAAAGAGAAGCTTCTGTAGTTATAAAGGGCCTCCAGAAAATGGGTGTCATACCTGTTATGGTTACAGGAGATAACTGGAGAACAGCTAACGCTGTAGCCAAGGAGGTTGGCATCCAAGATGTGAGGGCAGAGGTGATGCCTGCGGGAAAAGCCGACATTGTTCGTTCATTCCAAAATGATGGAAGCATAGTTGCAATGGTGGGCGATGGTATCAACGATTCTCCAGCATTAGCTGCTGCTGACATTGGCATGGCAATTGGGGCTGGAACTGATGTTGCAATAGAAGCTGCTAACTTCGTGTTGATGAGAAATAACTTGGAAGATGTGATCACAGCCATCCATCTTTCACGGAAGACGTTTGATCGTATTAGATTGAATTACGTATTCGCGATGGCTTACAATGTTGTTGCTATACCAGTTGCAGCTGGGGTTTTATATCCTTCACTTGGCATCAAGCTGCCACCATGGGTTTCTGGTGCATGCATGGCTCTTTCTTCTGTAAGTGTTGTATGCTCTTCTTTGCTTCTTAAAAGGTATAGAAGACCCATACTTACCACAGTTCCTGAAATAGTTGTAGAATAA 2976 0.4244 MASGDVRDLQLTFLPAGRKISATDDSDDLENARLLDSRDGIDDERRRIQVRISGMTCSACSNSIESALKAVDGVLSASVALLQNKADVVFNPALLKDEDIKNAIEDAGFEADILPESSGLGNTPHETLVGQFTIGGMTCAACVNSVEGILRNLPGVKRAVVALATSLGEVEYDPSVISKDDIVNAIEDSGFEASFVQSNEQDKIIFGVVGVYSLIDAQTIEDMLSNMKGVRQFCFDRISGELDVLFDPQVLSPRSLVDGIHEENGKFELHVKSPYTRMASKDVEETSNIFRVFISSLLLSVPLFFMKVVCPHIPFMYSLLLRRLGPFLMGDWVKWALVSVIQFGIGKRFYIAAGRALRNGSTNMDVLIVVGTTTSYVYSVYALLYGALTGFWSQTYFETSAMLITFVLLGKYLEVLAKGKTSDAIKKLVELAPATALLIINDKDGKSFKEREIDSLLVQPGDTLKTLPGTKIPADGIVTWGSSYVNESMVTGESVPVLKEVNASVIGGTINMHGVLHIKATKVGSDTVLSQIISLVETAQMSKAPIQKFADYVASIFVPTVVSLALLTFLGWYIAGAVGAYPEEWLTENGNHFVFALMFSISVVVIACPCALGLATPTAVMVGTGVGANNGVLIKGGDALERAQMVKYVIFDKTGTLTQGKASVTSAKVFTGMQRGEFLTLVASAEASSEHPLAKAVLAYARHFHFFDDSSATTENDVKSGWLFDVTDFSALPGRGVQCSIKGRHILVGNRMLMLENDIDISKEVENFVAELEQKAQTGILVSYDNILIGALGVADPLKREASVVIKGLQKMGVIPVMVTGDNWRTANAVAKEVGIQDVRAEVMPAGKADIVRSFQNDGSIVAMVGDGINDSPALAAADIGMAIGAGTDVAIEAANFVLMRNNLEDVITAIHLSRKTFDRIRLNYVFAMAYNVVAIPVAAGVLYPSLGIKLPPWVSGACMALSSVSVVCSSLLLKRYRRPILTTVPEIVVE* 992
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g3402 991 Gene3D - 745 796 IPR023299 GO:0000166
Psa1g3402 991 Gene3D - 657 744 IPR023299 GO:0000166
Psa1g3402 991 SUPERFAMILY Calcium ATPase, transmembrane domain M 382 940 IPR023298 -
Psa1g3402 991 CDD HMA 49 111 IPR006121 GO:0046872
Psa1g3402 991 Pfam haloacid dehalogenase-like hydrolase 646 879 - -
Psa1g3402 991 ProSitePatterns Heavy-metal-associated domain. 52 82 IPR017969 GO:0046872
Psa1g3402 991 SUPERFAMILY HMA, heavy metal-associated domain 43 115 IPR036163 GO:0046872
Psa1g3402 991 SUPERFAMILY Calcium ATPase, transduction domain A 450 536 IPR008250 -
Psa1g3402 991 TIGRFAM ATPase-IB_hvy: heavy metal translocating P-type ATPase 364 974 IPR027256 GO:0006812|GO:0016021|GO:0019829
Psa1g3402 991 Gene3D - 130 195 - -
Psa1g3402 991 PANTHER HEAVY METAL P-TYPE ATPASE 21 984 - -
Psa1g3402 991 SUPERFAMILY HMA, heavy metal-associated domain 202 262 IPR036163 GO:0046872
Psa1g3402 991 CDD P-type_ATPase_Cu-like 293 961 - -
Psa1g3402 991 ProSiteProfiles Heavy-metal-associated domain profile. 129 195 IPR006121 GO:0046872
Psa1g3402 991 ProSitePatterns E1-E2 ATPases phosphorylation site. 652 658 IPR018303 -
Psa1g3402 991 ProSiteProfiles Heavy-metal-associated domain profile. 203 269 IPR006121 GO:0046872
Psa1g3402 991 SFLD p-type atpase 632 917 IPR044492 -
Psa1g3402 991 ProSiteProfiles Heavy-metal-associated domain profile. 47 113 IPR006121 GO:0046872
Psa1g3402 991 CDD HMA 131 194 IPR006121 GO:0046872
Psa1g3402 991 Pfam Heavy-metal-associated domain 132 192 IPR006121 GO:0046872
Psa1g3402 991 Pfam Heavy-metal-associated domain 50 110 IPR006121 GO:0046872
Psa1g3402 991 SUPERFAMILY HAD-like 649 971 IPR036412 -
Psa1g3402 991 PRINTS Copper-transporting ATPase 1 signature 47 72 - -
Psa1g3402 991 PRINTS Copper-transporting ATPase 1 signature 73 96 - -
Psa1g3402 991 PRINTS Copper-transporting ATPase 1 signature 102 122 - -
Psa1g3402 991 ProSitePatterns Heavy-metal-associated domain. 134 163 IPR017969 GO:0046872
Psa1g3402 991 Gene3D - 45 116 - -
Psa1g3402 991 SUPERFAMILY HMA, heavy metal-associated domain 128 200 IPR036163 GO:0046872
Psa1g3402 991 PANTHER ATP7, ISOFORM B 21 984 - -
Psa1g3402 991 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 403 677 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Psa1g3402 991 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 737 945 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Psa1g3402 991 TIGRFAM TIGR00003: copper ion binding protein 131 193 IPR006122 GO:0005507
Psa1g3402 991 TIGRFAM TIGR00003: copper ion binding protein 48 111 IPR006122 GO:0005507
Psa1g3402 991 SFLD Haloacid Dehalogenase 632 917 - -
Psa1g3402 991 PRINTS P-type cation-transporting ATPase superfamily signature 486 500 - -
Psa1g3402 991 PRINTS P-type cation-transporting ATPase superfamily signature 650 664 - -
Psa1g3402 991 PRINTS P-type cation-transporting ATPase superfamily signature 790 801 - -
Psa1g3402 991 PRINTS P-type cation-transporting ATPase superfamily signature 812 822 - -
Psa1g3402 991 PRINTS P-type cation-transporting ATPase superfamily signature 865 884 - -
Psa1g3402 991 PRINTS P-type cation-transporting ATPase superfamily signature 888 900 - -
Psa1g3402 991 Pfam E1-E2 ATPase 431 629 - -
Psa1g3402 991 Gene3D - 617 922 IPR023214 -
Psa1g3402 991 Gene3D - 418 540 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g3402 Psa-Chr1 297713621 297720704 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g3402 7 991 Primary Pumps ATPases AT5G44790 71.741 0.0 1439
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g3402 K17686 - gmx:100804960 1615.9