Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g3399 ATGGAGATGAGCTGCCCGTCAAATGTTAATAGTAATGTCCCCATGTGTTCTACTAGCGCAGTTAATATTTCAGACTCGAACCAGAGTTTACGTGGCTTTGTGCAACAGCATGTTTTTGTGAGTGGATGGATGTATGTGAATGAACATGGACAAATGTGTGGTCCATATATTAAGGAGCAATTATATGAGGGGCTAACTTCAGGTTTCTTGCCATTTGAGCTTCCTGTGTATCCTGTAATCAATGGCACAATAACGAATCCTGTACCATTGAATTATTTCCAACAGTATCCTGACCATGTTTGCACCGGGTTTGCATACATGGGTATGAATTTCTCAGACACAACGATGTCTACTAATGGCTCCTCTTCTCGGGATATGACAATATATGGGCAATCAAATGTCAATGACTGCACTAAGGAATCCAATCACTTGAATTTAAACTCAGAGGCATTCAGGAGGATTATTTCTTGTCAGATGTCGGGAGGAGAATGTTGTTGGCTTTATGAGGATAATAAGGGTATGAAACAAGGGCCGCATTCCATTTCAGAATTGATTTCCTGGCACCACCATGGATATCTTGAAGATTCAACAGTGATCTCCCATTTTGACAATAAGTATGGAAGCTTTGTGTTGTTGGCCGCTGTAAATGCATTGAAAGGAGATATATCTGGAACCATTTGTGGATCAGATTCCAAAAGCAATGGGGTCGGTGATGTGATGAACTTAAATTGTGAAATATCCGAAGACATTTCTTCCCAATTGCACATGGGTGTAATGAAAGCTGCCCGAAGAGTTGTGCTAGATGGGATTATTGGCGATATCATTTCAGAATTTGTTACTGAAAAGAAATGCAAGAACCAAAAGCTCAAGTCTTCCAATCGAACTTCTGAAACTTGCACGTTGGACAGTAAAATGATGAACAATGGTACTTCCATTCCTCCTAGTGAGCCTGCATCTTCCCATTTTTTGGACGACCAGGCTTGTCATGAAATTTCCAGACCATCTTCAATGAGTGTTAAGGCAGTTGGAAGCATTGAAAATTTTTGGTGGTCATATTCTGTTGTTCGTAAAGCACTTTTTGATTATTGCTTGCAAGTCATGTGGAATGCAGTGTTTTTTGACACGGTAACAGAGTACTTATTTTCCTGGAGGAAGAGGAAATATTGGTCTCATCCTAAGCCTCTATCAACTGTTAATGAATCTAAAGATTATGTTAAAAAGATTAAATCAGAAGCTTTGGTTCTCAGGCCAGGTTCCTCTATATGCAATGTTGATGCTGATATCCAGTCTGGCGTGATGGCGACAGAAAGAGGCTGTCATCCTGAGTTGTTTATATCTGCTAATAACCTCAAAAGCCGAAACATGGCCGAAGGTCAAAGAGTTTCATGCAGTTATGATAATTCTAAAGTTTTGACATGCATTCTTGAACGCGTGGAGAACGATCTTCACTTCTCTGCAAAGGTGTCTCTTGCTGATTACGTTCTAAGTGTTGTTGAAAAGGAAGTAAACCTAGTAATTCCTTTCCTAGAAAAAGATAAATTCAGTGAGTTGCTGCAGGTTGATGATAGTAACTGCCATATCTCAGAGATGCTTACAAGTAAAACATCAGTTAAAGAAATTCTTAATGACAAGTCTGTCGATCCTGTGAAAAATATAGACTCAATTTGCACGTCTTCACCTGGAAACCGAATGTCTAATGTTTTCTCAAAAGCATTTCAAGAATTGTGTGGACATTTAAATGATGTGGTTGATGAAGAGGAGTTTGGTGACATGCCACCTGGATTTGAAAAGAACTCTCAAATAATATTCCCTCCCTACAACTCAAAATTTCGACCTTCAAGAATAGTTGAATGTAATCCCAAGATTACAGAACAGAAGCTGCATGATGAAGTCTTAGAGAAGTGGAAGTTGTCAATTCTTGATTCTACATTTAAACAGGTTCTTATGTCATCATGTACCATAAAGAAGAATTTTCAGTCTCGTGGTCATGAGAAGAGGAAGTCATTTGGTGCAAATAAGGAACATTTGAATAATGCTACTTCTGGACTGGGAAAAAGGAAGGAAGGCTCAAAAAGTTCTGGAGTTCGTCTGTTGGATGGAAAGCATACATATCAACGTAAGAAGCTACCACGGAAAGAGTTTTGCTCCTTTCAGCCTGTTGTAGAAGATGATTTAGGGCCAGGGAAGAAGCCTCTGGCGAACTTATGGAAACATGTTTCTGGAGATGTGAATGAGAGTTCAGAAGTTAAAATAACTGCTATTAAAGGTGGAAAGACTAAGATGATTAAAGGGAAGAAGGATGCATTTTCTAAGAGCGGGTCTTCTTTCAATGTCGATAATAGCTCACCCAATGATCAATTATCCTTGAAGAATAAAACTAGCCAGAAAGCATTGAAGTTTGCGCATACAGTTCAAAATGGTGTTATGGATATTATGAAGTTTAATGAAAAGAGGCCATCAGCATCTTCTAAGAGCAGGTCTTTCAATTTTGATAATAGCTCACCCACTGATCAATTATCCTTGAAGAATAAAACTAGCCAGACAGCATTGAAGTTTGCGCATACAGTTCAAAATGGTGTTATGGATATTATGAAGTTTAATGAAAAGAGGCCATCAGCATCTTCTAAGAGCAGGTCTTCTTTCAATGTTGATAATAGCTCACCCAGTGATCAATTATCCTTGAAGAATAAAACTAGCCAGACAGCATTGAAGTTTGCGCATACAGTTCAAAATGGTGTTATGGATATTATGAAGTTCAATGAAAAGAAGCCATCAGCATCTTCTAAGAGCTGGTCTTCTTTCAATGTTGATAATAGCTTACCCAGTGATCAATTATCCTTGAAGAATATAACTAGCCAGAAAGTAGTAAAGCTTGCACATACAGTTCAAAATGGTGTTACAGATATTATGAAGTTTAATGAAAAGAGGCTATCGGCATCAACTGATAATATTGTTGGTATGAAAGTAGCTAAAAGAAATAACTCTGATGTCACCATTCACAGGAAGACAACTGGTCATATCTCTAGAGATAAACTAAGTGTGACAAATAAAGTGTCAAAACCAAAAAGGAAGCATCAAACAGACGGTGTTACATCCCCACATCCTGCTAAGGTTTTGAAAATTTCAAATAGGGGGTCTAATCTGAGAGCTAGCAAACAAGTAACTGAGGCACTGAAGGAATCTGCCATATCCAAGTCATTGGATTTATGTCCTAAATCTAATGGATGTTCTAGGACTTCTATTAATGGGTGGGAATGGCATAAATGGTCACTAAGTGCTAGTCCTGCATGTAGAGCACGCGTCAGGGGTCTTCCACGTTTTCAAAACAAGTGCAGAAATTCTGAAAACATTTCATCCCAGGTGTCAAATGGTAAGGGTCTTTCTGCAAGAACCAATAGAGTGAAATTGCGTAACCTTCTTGCTGCAGCTGAGGGTGCAGATCTTCTGAAAGTGCCTCAATTGAAGGCACGAAAAAAGCGATTATGTTTTCAAAGGAGCAAGATACACGATTGGGGTCTTGTTGCCTTAGAGCCAATAGAAGCAGAGGACTTTGTGATTGAATATATTGGAGAATTAATTCGTCCTCGGATATCTGATATTCGTGAGCTTCAATATGAGAAAATGGGAATTGGAAGCAGTTACCTTTTCAGAATTGATGATGGACACGTGGTTGATGCTACAATGAAAGGAGGGATTGCAAGATTTATCAACCATTCTTGTGAGCCCAACTGTTACACAAAGGTTATATCTTTTGAGGGTCAAAAGAAGATTTTCATATATGCAAAGCGGCATATAAATGCCGGTGAAGAAATTACATACAATTATAAGTTTCCCTTGGAGGAGAAAAAGATTCCCTGCAATTGTGGTTCCAAAAAGTGTCGCAGATCATTGAATTAA 3897 0.3862 MEMSCPSNVNSNVPMCSTSAVNISDSNQSLRGFVQQHVFVSGWMYVNEHGQMCGPYIKEQLYEGLTSGFLPFELPVYPVINGTITNPVPLNYFQQYPDHVCTGFAYMGMNFSDTTMSTNGSSSRDMTIYGQSNVNDCTKESNHLNLNSEAFRRIISCQMSGGECCWLYEDNKGMKQGPHSISELISWHHHGYLEDSTVISHFDNKYGSFVLLAAVNALKGDISGTICGSDSKSNGVGDVMNLNCEISEDISSQLHMGVMKAARRVVLDGIIGDIISEFVTEKKCKNQKLKSSNRTSETCTLDSKMMNNGTSIPPSEPASSHFLDDQACHEISRPSSMSVKAVGSIENFWWSYSVVRKALFDYCLQVMWNAVFFDTVTEYLFSWRKRKYWSHPKPLSTVNESKDYVKKIKSEALVLRPGSSICNVDADIQSGVMATERGCHPELFISANNLKSRNMAEGQRVSCSYDNSKVLTCILERVENDLHFSAKVSLADYVLSVVEKEVNLVIPFLEKDKFSELLQVDDSNCHISEMLTSKTSVKEILNDKSVDPVKNIDSICTSSPGNRMSNVFSKAFQELCGHLNDVVDEEEFGDMPPGFEKNSQIIFPPYNSKFRPSRIVECNPKITEQKLHDEVLEKWKLSILDSTFKQVLMSSCTIKKNFQSRGHEKRKSFGANKEHLNNATSGLGKRKEGSKSSGVRLLDGKHTYQRKKLPRKEFCSFQPVVEDDLGPGKKPLANLWKHVSGDVNESSEVKITAIKGGKTKMIKGKKDAFSKSGSSFNVDNSSPNDQLSLKNKTSQKALKFAHTVQNGVMDIMKFNEKRPSASSKSRSFNFDNSSPTDQLSLKNKTSQTALKFAHTVQNGVMDIMKFNEKRPSASSKSRSSFNVDNSSPSDQLSLKNKTSQTALKFAHTVQNGVMDIMKFNEKKPSASSKSWSSFNVDNSLPSDQLSLKNITSQKVVKLAHTVQNGVTDIMKFNEKRLSASTDNIVGMKVAKRNNSDVTIHRKTTGHISRDKLSVTNKVSKPKRKHQTDGVTSPHPAKVLKISNRGSNLRASKQVTEALKESAISKSLDLCPKSNGCSRTSINGWEWHKWSLSASPACRARVRGLPRFQNKCRNSENISSQVSNGKGLSARTNRVKLRNLLAAAEGADLLKVPQLKARKKRLCFQRSKIHDWGLVALEPIEAEDFVIEYIGELIRPRISDIRELQYEKMGIGSSYLFRIDDGHVVDATMKGGIARFINHSCEPNCYTKVISFEGQKKIFIYAKRHINAGEEITYNYKFPLEEKKIPCNCGSKKCRRSLN* 1299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g3399 1298 MobiDBLite consensus disorder prediction 663 694 - -
Psa1g3399 1298 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETD1 1 1298 IPR044570 GO:0042800|GO:0051568
Psa1g3399 1298 SUPERFAMILY GYF domain 159 216 IPR035445 -
Psa1g3399 1298 MobiDBLite consensus disorder prediction 673 687 - -
Psa1g3399 1298 Pfam SET domain 1171 1275 IPR001214 GO:0005515
Psa1g3399 1298 MobiDBLite consensus disorder prediction 869 896 - -
Psa1g3399 1298 Gene3D SET domain 1005 1298 IPR046341 -
Psa1g3399 1298 ProSiteProfiles Post-SET domain profile. 1282 1298 IPR003616 -
Psa1g3399 1298 SMART PostSET_3 1282 1298 IPR003616 -
Psa1g3399 1298 ProSiteProfiles GYF domain profile. 163 213 IPR003169 GO:0005515
Psa1g3399 1298 SMART set_7 1159 1282 IPR001214 GO:0005515
Psa1g3399 1298 MobiDBLite consensus disorder prediction 821 843 - -
Psa1g3399 1298 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETD1 1 1298 - -
Psa1g3399 1298 SUPERFAMILY SET domain 1155 1294 IPR046341 -
Psa1g3399 1298 MobiDBLite consensus disorder prediction 873 896 - -
Psa1g3399 1298 MobiDBLite consensus disorder prediction 817 843 - -
Psa1g3399 1298 ProSiteProfiles SET domain profile. 1159 1276 IPR001214 GO:0005515
Psa1g3399 1298 Gene3D - 156 226 IPR035445 -
Psa1g3399 1298 CDD SET_SETD1 1147 1294 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g3399 Psa-Chr1 297297423 297312374 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g3399 1150 1298 C2H2 Transcription Factor Family AT2G23740 36.257 8.60e-16 81.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Psa1g3399 SET 1.2e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g3399 - - cam:101514300 1758.04