Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g3388 ATGAACTGCGTCATGACCTCGATACTTGTCTCAGCTGTTCAGGAAGGGGGCAATGCTCCAACTCCTACATCTTTTCCTCAAATTACTGACAAACATTTTTGTTCTACACCAGCACCAAAACGTAAAGGTCCAATTGGAGATTTAAGCAACTCAACCTTCTCAGAGATGCTGCCGGGCCGTGTTACAGTGGCTTCGGTTAAGAACTTCCAACTTGTGGCTGCTGTTGAGCCATGTCATAATGATTCTGCCGCAGAGCAAGAAAAGGTTATCTTGCAGTTTGGAAAACTAACTTTTTTAGTATGCTTAGCGCAAAACGCTGTGTCGCTTGCCATGATACGTCTAAGGATACGCCAATGA 357 0.4454 MNCVMTSILVSAVQEGGNAPTPTSFPQITDKHFCSTPAPKRKGPIGDLSNSTFSEMLPGRVTVASVKNFQLVAAVEPCHNDSAAEQEKVILQFGKLTFLVCLAQNAVSLAMIRLRIRQ* 119
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g3388 118 Pfam Tub family 58 96 IPR000007 -
Psa1g3388 118 PANTHER TUBBY-RELATED 1 55 - -
Psa1g3388 118 PANTHER TUBBY-RELATED 59 96 - -
Psa1g3388 118 PRINTS Tubby superfamily signature 57 73 IPR000007 -
Psa1g3388 118 PRINTS Tubby superfamily signature 86 105 IPR000007 -
Psa1g3388 118 Gene3D Tubby Protein; Chain A 2 99 IPR025659 -
Psa1g3388 118 PANTHER TUBBY-LIKE F-BOX PROTEIN 59 96 - -
Psa1g3388 118 PANTHER TUBBY-LIKE F-BOX PROTEIN 1 55 - -
Psa1g3388 118 SUPERFAMILY Tubby C-terminal domain-like 1 97 IPR025659 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g3388 Psa-Chr1 296707071 296707520 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g3388 1 96 TUB Transcription Factor Family AT1G47270 41.379 9.86e-14 64.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Psa1g3388 Tub 4.4e-11 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g3388 K19600 - gmx:100798958 128.642