Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g3387 AATTTCACCTGTTGAAACCACTGCTGCTGAAGCAGCTCATCTGATTGAAAAGAAAATTAAGGATGCAACTGAGAGTACAACATCATCCATCATAGAGAACTCAAAATGTGCTATAGAAAGGGCTCTTGCAGTGGCAGAAGAGGCAGCTCAGCATGTACCTGAAATAAAGAAAATGGTGTTCTTGTTACAACAAGGAAATGAAGAGCAAATGGTGAAAATTCTTGGACTGACACCAACTGCAAACGACGTATCTCCAAGAGTTCCAGCATGTAACTATATTGTTAGCTCCGTTGCCTATGAGCTGAATGTTCTCCGCACGAGAGGGCCAAGAAGAATGAACTGCGTCATGACCTCGATACCTGTCTCAACTGTTCAGGAAGGGGGCAATGCTCCAACTCCTACATCTTTTCCTCAAATTAATGACAAACATTTTTGTTCTACACCAACACCAAAAGGTAAAGGTCCAATTGGAGATTTAAGCAACTCAACCTTCTCAGAGATGCTGCCGGGCCGTGTTACAGTGGCTTCGGTTAAGAACTTCCAACTTGTGGCTGCTGTTGAGCCATGTCATAATGTTTCTACCGCAGAGCAAGAAAAGGTTATCTTGTAG 610 0.4311 ISPVETTAAEAAHLIEKKIKDATESTTSSIIENSKCAIERALAVAEEAAQHVPEIKKMVFLLQQGNEEQMVKILGLTPTANDVSPRVPACNYIVSSVAYELNVLRTRGPRRMNCVMTSIPVSTVQEGGNAPTPTSFPQINDKHFCSTPTPKGKGPIGDLSNSTFSEMLPGRVTVASVKNFQLVAAVEPCHNVSTAEQEKVIL* 203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g3387 202 Gene3D Tubby Protein; Chain A 54 202 IPR025659 -
Psa1g3387 202 PANTHER TUBBY-LIKE F-BOX PROTEIN 170 202 - -
Psa1g3387 202 PANTHER TUBBY-LIKE F-BOX PROTEIN 76 166 - -
Psa1g3387 202 SUPERFAMILY Tubby C-terminal domain-like 79 188 IPR025659 -
Psa1g3387 202 PANTHER TUBBY-RELATED 170 202 - -
Psa1g3387 202 PANTHER TUBBY-RELATED 76 166 - -
Psa1g3387 202 PRINTS Tubby superfamily signature 91 118 IPR000007 -
Psa1g3387 202 PRINTS Tubby superfamily signature 168 184 IPR000007 -
Psa1g3387 202 Pfam Tub family 80 202 IPR000007 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g3387 Psa-Chr1 296685949 296686766 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g3387 78 202 TUB Transcription Factor Family AT1G47270 42.857 3.43e-24 96.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Psa1g3387 Tub 6e-19 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g3387 K19600 - gmx:100798958 174.096