Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Psa1g3387 | AATTTCACCTGTTGAAACCACTGCTGCTGAAGCAGCTCATCTGATTGAAAAGAAAATTAAGGATGCAACTGAGAGTACAACATCATCCATCATAGAGAACTCAAAATGTGCTATAGAAAGGGCTCTTGCAGTGGCAGAAGAGGCAGCTCAGCATGTACCTGAAATAAAGAAAATGGTGTTCTTGTTACAACAAGGAAATGAAGAGCAAATGGTGAAAATTCTTGGACTGACACCAACTGCAAACGACGTATCTCCAAGAGTTCCAGCATGTAACTATATTGTTAGCTCCGTTGCCTATGAGCTGAATGTTCTCCGCACGAGAGGGCCAAGAAGAATGAACTGCGTCATGACCTCGATACCTGTCTCAACTGTTCAGGAAGGGGGCAATGCTCCAACTCCTACATCTTTTCCTCAAATTAATGACAAACATTTTTGTTCTACACCAACACCAAAAGGTAAAGGTCCAATTGGAGATTTAAGCAACTCAACCTTCTCAGAGATGCTGCCGGGCCGTGTTACAGTGGCTTCGGTTAAGAACTTCCAACTTGTGGCTGCTGTTGAGCCATGTCATAATGTTTCTACCGCAGAGCAAGAAAAGGTTATCTTGTAG | 610 | 0.4311 | ISPVETTAAEAAHLIEKKIKDATESTTSSIIENSKCAIERALAVAEEAAQHVPEIKKMVFLLQQGNEEQMVKILGLTPTANDVSPRVPACNYIVSSVAYELNVLRTRGPRRMNCVMTSIPVSTVQEGGNAPTPTSFPQINDKHFCSTPTPKGKGPIGDLSNSTFSEMLPGRVTVASVKNFQLVAAVEPCHNVSTAEQEKVIL* | 203 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Psa1g3387 | 202 | Gene3D | Tubby Protein; Chain A | 54 | 202 | IPR025659 | - | |
Psa1g3387 | 202 | PANTHER | TUBBY-LIKE F-BOX PROTEIN | 170 | 202 | - | - | |
Psa1g3387 | 202 | PANTHER | TUBBY-LIKE F-BOX PROTEIN | 76 | 166 | - | - | |
Psa1g3387 | 202 | SUPERFAMILY | Tubby C-terminal domain-like | 79 | 188 | IPR025659 | - | |
Psa1g3387 | 202 | PANTHER | TUBBY-RELATED | 170 | 202 | - | - | |
Psa1g3387 | 202 | PANTHER | TUBBY-RELATED | 76 | 166 | - | - | |
Psa1g3387 | 202 | PRINTS | Tubby superfamily signature | 91 | 118 | IPR000007 | - | |
Psa1g3387 | 202 | PRINTS | Tubby superfamily signature | 168 | 184 | IPR000007 | - | |
Psa1g3387 | 202 | Pfam | Tub family | 80 | 202 | IPR000007 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Psa1g3387 | Psa-Chr1 | 296685949 | 296686766 | Tandem |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Psa1g3387 | 78 | 202 | TUB Transcription Factor Family | AT1G47270 | 42.857 | 3.43e-24 | 96.3 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | TUB | Psa1g3387 | Tub | 6e-19 | CL0395 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Psa1g3387 | K19600 | - | gmx:100798958 | 174.096 |