Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g3377 ATGGAACTGGAAGGGGAAAGTTCTTTACCCGACAACAAAAGTTGTGATTTTTCTGATGGAAATGAGAAGATTAAGAATGTTGCTTCTGTTGGGTTTGGTGAGCTTTTCAGATTTGCTGATGGGTTGGATTATATTCTCATGACAGTTGGAACTCTTGGAGCAATTGTACATGGTTGTTCATTGCCACTTTTTCTTCGGTTCTTTGCTGATCTTGTTAACTCTTTTGGTTCTAATGCTGACGATTTGGACAAGATAAACATTGTTTCTGATAGGAAATGTGGGATCATTGATTTCATTCAGAGGCTGATTGGAGGTTACTATGGGGGAGAGGTTTTCGTGTTTGGATCAGTCCCACTGAAAATCTACCTTCTAGATGGAGAAATTGACTTGACAGTTCTCAGTCAAGAAAGTGTAGAGGAGGATTTGGCGCAAGCAATATGCAATCTACTTGGAAGTGGAGAAGACCTCGAATATGAAGTGAAAGATATACATCATATACGTGCTCCGGTAAAGGTTGTAAAATGCACAGTGAAAGGTATAGCGGTTGACATCTCTTTCAACCAGATGTATAATCTTAGTCAAGCTTGGTGCTATTATGAGATTCGACTTCTTGGTGCACACCATGGCCTGCTCTCAACATATGCTCTTGAAATATTAGTTTTATATATTATCAATCGTTTTCATCCATCATTGTGCGGTTCTCTAGAGGTGCTATACAGATTTTTTGACTACTACAACACATTTGATTGGGAGAAAAACTATATCACCATAGATGGTCCGCAACCATTATCCTCCCTTCCAGAAATTGTTGAGAAACCAGAATCTAATCGAGGTGATTTGCTTCTCAGTAAAGAGCTTCTGAAAAATTACAGGGAGATGTGCTCTTTTCCAAAGGCATGCGAGACTACACCCAGTGAATTCCCCATCAACGACAACAACCTAGGCCGCAGTGTCAACAAAAGCACTTTACATCGAACTCGTTACGCTTTTGCCTTCGGTGCTGAAAAGCTTAAGGAGATTCTTGATCTTCAAGGAGAAAGCATGGGTGGAGCACTTGAAGTGTTTTTCATGAACACCTTGAATAGAAATCGGAAAGGACAAAGGCCAGATATCGATGTTCCTGTTCCTGCATTTGGTACGGGAAAATCTGAAGAGCCTGTCCTTGTTGGAGATTGTGACAGTTTCTATGGTGGCTTACAACATGTTCAGATGTACCGTAACTATGATGTGCCGCTTGCACCTCCAATTTCCCCACCGATACCATTTGATGCTGACATGCTTAAGCTACAACAAAACTGGCTTAGGTATTATCATAGAGGTACTAATGTATACGTCCCTAGACAGACATTCTTTCATCCAAATGCTCGTCCGCATCCAAACGAGGCCACGAATGCATTGGACTCCGAGTCAGAAAAGCTGGTTCAAAAAGCTCTTGATAGGTTCATGATTGGTAGAACAACTCTTGTAATCGCGCATCGACTATCTACTATTCGCAAAGTGGACCTTGTCGTTGTACTTCAGCAAGGAAGTGTTTCTGAAATTGGAACTCACGACGAGCTCTTTGCTAAAGAGAAAAATAGATTTATGCCAAGCTTATCAGAATGCAGGAGACGGCAAATGAAAGTTCAACAAGCAATTCCAAAAAAGTAG 1650 0.4103 MELEGESSLPDNKSCDFSDGNEKIKNVASVGFGELFRFADGLDYILMTVGTLGAIVHGCSLPLFLRFFADLVNSFGSNADDLDKINIVSDRKCGIIDFIQRLIGGYYGGEVFVFGSVPLKIYLLDGEIDLTVLSQESVEEDLAQAICNLLGSGEDLEYEVKDIHHIRAPVKVVKCTVKGIAVDISFNQMYNLSQAWCYYEIRLLGAHHGLLSTYALEILVLYIINRFHPSLCGSLEVLYRFFDYYNTFDWEKNYITIDGPQPLSSLPEIVEKPESNRGDLLLSKELLKNYREMCSFPKACETTPSEFPINDNNLGRSVNKSTLHRTRYAFAFGAEKLKEILDLQGESMGGALEVFFMNTLNRNRKGQRPDIDVPVPAFGTGKSEEPVLVGDCDSFYGGLQHVQMYRNYDVPLAPPISPPIPFDADMLKLQQNWLRYYHRGTNVYVPRQTFFHPNARPHPNEATNALDSESEKLVQKALDRFMIGRTTLVIAHRLSTIRKVDLVVVLQQGSVSEIGTHDELFAKEKNRFMPSLSECRRRQMKVQQAIPKK* 550
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g3377 549 PANTHER NUCLEOTIDYLTRANSFERASE DOMAIN PROTEIN 193 454 - -
Psa1g3377 549 PANTHER NUCLEOTIDYLTRANSFERASE DOMAIN PROTEIN 92 192 - -
Psa1g3377 549 Gene3D ABC transporter type 1, transmembrane domain 26 114 IPR036640 GO:0005524|GO:0016021
Psa1g3377 549 SUPERFAMILY PAP/OAS1 substrate-binding domain 195 343 - -
Psa1g3377 549 Gene3D - 461 525 IPR027417 -
Psa1g3377 549 Gene3D - 163 347 - -
Psa1g3377 549 PANTHER PAP/OAS1 SUBSTRATE-BINDING DOMAIN SUPERFAMILY 193 454 - -
Psa1g3377 549 PANTHER PAP/OAS1 SUBSTRATE-BINDING DOMAIN SUPERFAMILY 92 192 - -
Psa1g3377 549 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 460 524 IPR027417 -
Psa1g3377 549 SUPERFAMILY Nucleotidyltransferase 91 194 IPR043519 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g3377 Psa-Chr1 294981369 294983562 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g3377 23 85 Calmodulin-binding Proteins AT2G36910 68.254 3.42e-22 99.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g3377 - - gmx:100787145 452.21