Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g3360 ATGGCTCATGAAATTTCTACATCTCAAAAGAACCCTGGTACTTTTCCTGTGGAACAGGAATTAGATGTTACTTCCGTAGGATTTATTCCAGATGAGAGAATAAATTCGGTACACTTGGTAGCAACTGATGTTTCATCGCACGAGCACTGGAATGAAGTCCCCAATTTAAAAAACTTTTGCAATACTGTTAACCATGATACTGTTTCTTTGGAAAGACAGAGTCCCATTGTAAGTTCAGACATTACACAATGTGATGACAGTTATTTTGAAGATCTTCAGATTGTAAAGAATCAAGTGATTGACATTGATGATTCTATGAATATGTCAACTCATCCTATGCAACTTCTCAATGTTGAGACAGATACGATAACTTGTTATAGAACTATTGTTCCTGAGGATATGGTTGAACGCAGGGCTAACATTGTCGCTCGACTCAAGTCTCCTGAAGACGGTGTTGCTCCTTTTATTGCATTTCTTCGAAATGCTGGCACCGTTCAGGAATTGAAATCTGATAATCACTATAATCTTCAGTGGCTTAATGATAAATACCAGATCGATCCTACAACAAATCCAAAACTTTGCAACTATCGACTTCAAATCTGTGGCGATGAATTGGGGTCTATTTTTGGAGGACATGATGTAAAGGATTTGAAATATCATGCAACACCACTTGCCACTGCTGCACCTACTGCAGCAGCGGTTAGTCCAACAATCACATCAGACCCTTACCACCACAGAGGACAAGAACCTATTCATGTTCAAATCGATTTGTTACAAAATTTGATTCCAACGAGACATGTTTACAAACAAAACTTGGGCGGATGGATTGCCCAAATGGTTTTTCGGCTGCCTTTTCATGAACAGTGGCCACCTATTATATATGACTCATCCCCTCTCTGCTGTGTTACTGTGTCTTCTCAGAGTAGTGGGAAGTGTTCATTTGAAGGATCAAAAGAAGCATCAACTCGTCCAGGACTTCAGTCAATTTCATCTCCAAGAGTTCTATGTTGGTCAACTCCTCCAGGCAGTGAACGAGTGACTTCCAAGTCTACCTGCACATCTAGCCAAGACTTTGCCATTGCCCAGCATGCTGACTCCCAGTCTGTACAGAGTGGAAGCATGGAACTCTTGGAAAACAGTGAAGTTTTGTTGTTTGACCTTCATGAGTTGGCAGATAGGTGCAAAGCCAAGAAGTTACATCTAGTTTATGATAAGAGGGAAACATCCTCGCAGTCTTTGCTTCATCATAATTTAGGTGAGTTCCAAGAGCTTGTTCTTGTAGCAATTTTTAAAGGTGCTTGCTTAACTCGAGAGGAATTCAGTACTCTCCAGCTCCTTCCTCCATGGAGATTACGCGACAACACGGTTAATTATGGTTTGGGATTGGTTTGTTGCTATTCAGAATGCGACCTTCTCTCAGTTTTATCCGGTGGCTACTTTTACATGTTTGATCCTCATAGTTTGGTACCTGATGGATCTTCAACTAATGCCCCATCAGTAAAGATGTTTTCTCTGATAGAAAAGTGTTGTTGTTCTGCGGAGAGTTCGAATCTACTTAGGGAGAGGGACGAGTGTTACCGTCCTTTTGCTTTTGTTTCCTTCTATACCTTTATTATGACTAACTGTAGTGGTGGTGTTAATGGCTCTGATAGTTTGGGAAACAACACTGATAACGTTTGCTTTACCCAATGCACCTTTGGTTTTCTCATTTGCCGTTTCCCTATGAGTAGCGGACAGTTGGCCGCTATTGAGACTGTTTGTCCCCTGGTCCCGCCGCCCAACAGCTGCGTGGCTAGGGCTTGGTCAGTATTCCCACCACATCATTGTGGGCCAATATGGAACGGGTTTTGTTTGACCCGAATCTCCACGGTTCAAGGACCGTTGGGTTCTCTTTCAGCCCAACCTCATATGGCCCATGCTGGCCTTTATTAG 1932 0.4229 MAHEISTSQKNPGTFPVEQELDVTSVGFIPDERINSVHLVATDVSSHEHWNEVPNLKNFCNTVNHDTVSLERQSPIVSSDITQCDDSYFEDLQIVKNQVIDIDDSMNMSTHPMQLLNVETDTITCYRTIVPEDMVERRANIVARLKSPEDGVAPFIAFLRNAGTVQELKSDNHYNLQWLNDKYQIDPTTNPKLCNYRLQICGDELGSIFGGHDVKDLKYHATPLATAAPTAAAVSPTITSDPYHHRGQEPIHVQIDLLQNLIPTRHVYKQNLGGWIAQMVFRLPFHEQWPPIIYDSSPLCCVTVSSQSSGKCSFEGSKEASTRPGLQSISSPRVLCWSTPPGSERVTSKSTCTSSQDFAIAQHADSQSVQSGSMELLENSEVLLFDLHELADRCKAKKLHLVYDKRETSSQSLLHHNLGEFQELVLVAIFKGACLTREEFSTLQLLPPWRLRDNTVNYGLGLVCCYSECDLLSVLSGGYFYMFDPHSLVPDGSSTNAPSVKMFSLIEKCCCSAESSNLLRERDECYRPFAFVSFYTFIMTNCSGGVNGSDSLGNNTDNVCFTQCTFGFLICRFPMSSGQLAAIETVCPLVPPPNSCVARAWSVFPPHHCGPIWNGFCLTRISTVQGPLGSLSAQPHMAHAGLY* 644
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g3360 643 Pfam eIF3 subunit 6 N terminal domain 127 189 IPR019010 -
Psa1g3360 643 PANTHER - 375 507 - -
Psa1g3360 643 SMART eIF3_N_2 80 199 IPR019010 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g3360 Psa-Chr1 293659188 293667708 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g3360 89 207 Eukaryotic Initiation Factors Gene Family AT3G57290 39.344 9.32e-16 78.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g3360 - K17592 gmx:100789980 200.29