Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Psa1g3356 | ATGGAAGAGGCACATAAGGGAGGTGAAGAAGTAAAGTACAGGGGTGTGAGGAGAAGGCCATGGGGAAAATATGGAGCAGAGATTAGAGACCCTACAAAGCCAACTGGAAGACAATGGTTAGGAACATTTGACACAGCTGAGGAAGCTGCTAGAGCTTATGATTGTGCTGCCATTCGTTTGAGAGGTGCTCTTGCCATTCTTAATTTTCCTGATGAATACTATTTTCATCTTTCTTCTTTATCGCAGTCATCGTCGTCGTCATCGTCTGCAACTTGCTCTAGAGAGCAAAAGGAAGTAATTGAGTTTGAGTATTTGGATAACAAGGTTTTGGAAGATCTTCTTGGGTCATCTAATGAAGAGAATGATGATTAA | 372 | 0.4167 | MEEAHKGGEEVKYRGVRRRPWGKYGAEIRDPTKPTGRQWLGTFDTAEEAARAYDCAAIRLRGALAILNFPDEYYFHLSSLSQSSSSSSSATCSREQKEVIEFEYLDNKVLEDLLGSSNEENDD* | 124 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Psa1g3356 | 123 | PANTHER | DNA-BINDING DOMAIN | 2 | 118 | IPR044808 | GO:0003700|GO:0009873 | |
Psa1g3356 | 123 | CDD | AP2 | 12 | 71 | IPR001471 | GO:0003700|GO:0006355 | |
Psa1g3356 | 123 | Pfam | AP2 domain | 12 | 62 | IPR001471 | GO:0003700|GO:0006355 | |
Psa1g3356 | 123 | ProSiteProfiles | AP2/ERF domain profile. | 12 | 70 | IPR001471 | GO:0003700|GO:0006355 | |
Psa1g3356 | 123 | PRINTS | Ethylene responsive element binding protein signature | 13 | 24 | IPR001471 | GO:0003700|GO:0006355 | |
Psa1g3356 | 123 | PRINTS | Ethylene responsive element binding protein signature | 36 | 52 | IPR001471 | GO:0003700|GO:0006355 | |
Psa1g3356 | 123 | Gene3D | AP2/ERF domain | 11 | 71 | IPR036955 | GO:0003700|GO:0006355 | |
Psa1g3356 | 123 | SUPERFAMILY | DNA-binding domain | 12 | 72 | IPR016177 | GO:0003677 | |
Psa1g3356 | 123 | PANTHER | ETHYLENE RESPONSE FACTOR | 2 | 118 | - | - | |
Psa1g3356 | 123 | SMART | rav1_2 | 12 | 76 | IPR001471 | GO:0003700|GO:0006355 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Psa1g3356 | Psa-Chr1 | 293313775 | 293314758 | Tandem |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Psa1g3356 | 9 | 116 | AP2-EREBP Transcription Factor Family | AT3G23230 | 59.664 | 6.68e-40 | 128 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | AP2 or ERF-ERF | Psa1g3356 | AP2 | 5.2e-13 | CL0081 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Psa1g3356 | - | - | gmx:100796977 | 164.466 |