Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g3356 ATGGAAGAGGCACATAAGGGAGGTGAAGAAGTAAAGTACAGGGGTGTGAGGAGAAGGCCATGGGGAAAATATGGAGCAGAGATTAGAGACCCTACAAAGCCAACTGGAAGACAATGGTTAGGAACATTTGACACAGCTGAGGAAGCTGCTAGAGCTTATGATTGTGCTGCCATTCGTTTGAGAGGTGCTCTTGCCATTCTTAATTTTCCTGATGAATACTATTTTCATCTTTCTTCTTTATCGCAGTCATCGTCGTCGTCATCGTCTGCAACTTGCTCTAGAGAGCAAAAGGAAGTAATTGAGTTTGAGTATTTGGATAACAAGGTTTTGGAAGATCTTCTTGGGTCATCTAATGAAGAGAATGATGATTAA 372 0.4167 MEEAHKGGEEVKYRGVRRRPWGKYGAEIRDPTKPTGRQWLGTFDTAEEAARAYDCAAIRLRGALAILNFPDEYYFHLSSLSQSSSSSSSATCSREQKEVIEFEYLDNKVLEDLLGSSNEENDD* 124
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g3356 123 PANTHER DNA-BINDING DOMAIN 2 118 IPR044808 GO:0003700|GO:0009873
Psa1g3356 123 CDD AP2 12 71 IPR001471 GO:0003700|GO:0006355
Psa1g3356 123 Pfam AP2 domain 12 62 IPR001471 GO:0003700|GO:0006355
Psa1g3356 123 ProSiteProfiles AP2/ERF domain profile. 12 70 IPR001471 GO:0003700|GO:0006355
Psa1g3356 123 PRINTS Ethylene responsive element binding protein signature 13 24 IPR001471 GO:0003700|GO:0006355
Psa1g3356 123 PRINTS Ethylene responsive element binding protein signature 36 52 IPR001471 GO:0003700|GO:0006355
Psa1g3356 123 Gene3D AP2/ERF domain 11 71 IPR036955 GO:0003700|GO:0006355
Psa1g3356 123 SUPERFAMILY DNA-binding domain 12 72 IPR016177 GO:0003677
Psa1g3356 123 PANTHER ETHYLENE RESPONSE FACTOR 2 118 - -
Psa1g3356 123 SMART rav1_2 12 76 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g3356 Psa-Chr1 293313775 293314758 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g3356 9 116 AP2-EREBP Transcription Factor Family AT3G23230 59.664 6.68e-40 128
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Psa1g3356 AP2 5.2e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g3356 - - gmx:100796977 164.466