Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g3347 ATGTCAACAAGCGCTGATACTACTGCAATTGAGGCTGTTGTAGTGATAGTGATAGTTGTTGTTAAGGTAGCTATTGTGATTTGTGTGTGTAGAAAAAGACATCAAGTAAGTGGTGGATCCGTTATTCCAGAATCACAATTTATAACTCTCACTATGGATAAATTTCTAAATGACATGGAAAGAGAGAAGCCAATAAGATTCACCGGCCAACAGCTAAGAATTGCAACAGACAACTATTCCAACTTGTTGGGATCAGGTGGATTTGGAACTGTTTACAAAGGAATTTTCAGTAACGGAACTATGGTAGCTGTGAAGGTTCTACGCGGTAGTTCTAACAAGAAAATCGACGAACAGTTCATGGCAGAAGTTGGAACAATAGGTAGAATTCATCACTTCAATCTCGTTAGGCTATATGGATTTTGCTTTGAACGAAACTTGATCGCGCTTGTTTACGAGTACATGGGAAATGGATCACTTGACAGGTATTTGTTTCACGAAAAAAAGGCGTTAGAATACGAAAAACTTCATGAGATTGCAATCGGTACGGCAAGAGGAATTGCTTACTTGCATGAAGAGTGTCAACATAGAATAATCCACTACGATATAAAACCAGGAAATATTCTCTTGGATAAGAACTTCTATCCAAAAGTTGCTGATTTTGGTTTGGCGAAACTTTGCAACAGGGAAAATACTCATATAACGATGACCGGAGGAAGAGGGACGCCTGGATACGCTGCACCTGAGCTTTGGATGCCGTTTCCTATAACTCATAAATGTGATGTTTATAGTTTTGGTATGTTATTGTTTGAGATTATAGGTAGGAGAAGAAACCTTGACATTAAAAATAGTGAAAGCCAAGAATGGTTTCCAATTTGGGTATGGAAAAAATTTGATGATGGACTATTAGGGGAAGCAATGATAATATGTGGAATAGAAGAGAAAAATAAAGAGATTGCAGAGAGAATGGTTAAGGTAGCTTTATGGTGTGTTCAATATAGGCCAGACTTAAGGCCTATAATGAGTGTTGTGGTGAAAATGTTGGAAGGTTCATTAGAAATTCCAACGAGTTTGAACCCTTTTCAACATTTGTTTGATGGAACTAACTTTGCTACTCAATCAGTGCAACTGTCAAATACTTACACAACTACTGCTACTTCTTCTACCTCTTCTGTTATGGTTAGTGATTCAAGCATTGTGTGTGCTACTCCAATTATGAGGAAGTATGAGATTGAGTTGGCATCTAGCATAGTGTGA 1254 0.378 MSTSADTTAIEAVVVIVIVVVKVAIVICVCRKRHQVSGGSVIPESQFITLTMDKFLNDMEREKPIRFTGQQLRIATDNYSNLLGSGGFGTVYKGIFSNGTMVAVKVLRGSSNKKIDEQFMAEVGTIGRIHHFNLVRLYGFCFERNLIALVYEYMGNGSLDRYLFHEKKALEYEKLHEIAIGTARGIAYLHEECQHRIIHYDIKPGNILLDKNFYPKVADFGLAKLCNRENTHITMTGGRGTPGYAAPELWMPFPITHKCDVYSFGMLLFEIIGRRRNLDIKNSESQEWFPIWVWKKFDDGLLGEAMIICGIEEKNKEIAERMVKVALWCVQYRPDLRPIMSVVVKMLEGSLEIPTSLNPFQHLFDGTNFATQSVQLSNTYTTTATSSTSSVMVSDSSIVCATPIMRKYEIELASSIV* 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g3347 417 CDD STKc_IRAK 83 349 - -
Psa1g3347 417 Gene3D Phosphorylase Kinase; domain 1 51 153 - -
Psa1g3347 417 SUPERFAMILY Protein kinase-like (PK-like) 60 348 IPR011009 -
Psa1g3347 417 Gene3D Transferase(Phosphotransferase) domain 1 154 357 - -
Psa1g3347 417 PANTHER PUTATIVE-RELATED 9 413 - -
Psa1g3347 417 ProSitePatterns Protein kinases ATP-binding region signature. 83 105 IPR017441 GO:0005524
Psa1g3347 417 ProSiteProfiles Protein kinase domain profile. 77 361 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa1g3347 417 ProSitePatterns Serine/Threonine protein kinases active-site signature. 197 209 IPR008271 GO:0004672|GO:0006468
Psa1g3347 417 SMART serkin_6 77 347 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa1g3347 417 Pfam Protein kinase domain 81 343 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa1g3347 417 PANTHER RUST RESISTANCE KINASE LR10-RELATED 9 413 IPR045874 GO:0004672
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g3347 Psa-Chr1 292927546 292928914 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g3347 66 352 Receptor kinase-like Gene Family AT5G38280 43.289 3.57e-79 256
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-Os Psa1g3347 Pkinase 3.8e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g3347 - - gmx:100803355 667.922