Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Psa1g3346 | ATGTCAACCAGTTATTCAACCAATGATTCAACCAGTGGTGCTGACGTTGGAGTTGTAGTTGTTATAATCCTAGTAGTAGTTGCTGTTAAAGTAGCTATTTTTGTTTGTGTTTGTAGAAGAATTAATCAAGTAAGAGGTGGATCTAAATCCATTAGTTCCATTAGTCCAGATTCACAATTTATAACTCTCACAATGGATAAATTTCTAAACGACATGGAAAGGGAGAAACCAATAAGATTCACTGGTCAACAGCTAAGAATTGCAACAGACAACTATTCCAACTTGTTGGGATCAGGTGGATTTGGAACTGTTTACAAAGGAGTTTTCAGTAACGGGTCGATGGTAGCTGTGAAGGTTCTTCGCGGTGGTTCTAACAAGAAAATCGACGAACAATTTATGGCAGAAGTCGGAACAATTGGTAGAATTCATCACTTTAATCTCGTTAGGCTATATGGATTTTGCTTTGAAAGAAACTTGATAGCACTTGTTTATGAGTACATGGGAAATGGATCACTTGACAGGTATTTGTTTCACGAAAAAAAGGCGTTAGAATATGAAAAACTTCATGAGATTGCAATCGGTACAGCAAGAGGAATTGCTTACTTGCATGAAGAGTGTCAACATAGAATAATCCACTATGATATAAAGCCAGGAAATATTCTCTTGGATGAGAACTTCTATCCAAAAGTTGCTGATTTTGGTTTGGCGAAACTTTGCAACAGAGAAAATACTCACATTACGATGACCGGAGGAAGGGGGACGCCCGGTTACGCTGCACCTGAGCTTTGGATGCCATTTCCTATAACTCACAAATGTGATGTTTATAGTTTTGGTATGCTATTATTTGAAATTGTAGGTAGAAGAAGAAACCTTGAGATTAAAAATAGTGATAGCCAAGAATGGTTTCCAATTTGGGTATGGAAAAAATTTGATGATGGACTATTAGGGGAAGCAATGATAGTTTGTGGAATAGAAGAGAAAAATAAAGAGATTGCAGAGAGAATGGTTAAGGTAGCTTTATGGTGTGTTCAATATAGACAAGAATTAAGGCCTATAATGAGTGTTGTGGTGAAAATGTTGGAAGGTTCATTAGAAATTCCAAAGATTTTGAACCCTTTTCAACATTTGTTTGATGGAGCTAACTTTGCTACTCACTCAGTGCAAGTGTCAAATACTTACACAACTAGTGCTACTTCTTCTTCTGTTAAGGTTAGTGATTCTAGCATTGTGTGTGCTACTCCAATTATGAAGAAATATGAGATTGAAGTAGCATCTAGCATAGTGTGA | 1287 | 0.3667 | MSTSYSTNDSTSGADVGVVVVIILVVVAVKVAIFVCVCRRINQVRGGSKSISSISPDSQFITLTMDKFLNDMEREKPIRFTGQQLRIATDNYSNLLGSGGFGTVYKGVFSNGSMVAVKVLRGGSNKKIDEQFMAEVGTIGRIHHFNLVRLYGFCFERNLIALVYEYMGNGSLDRYLFHEKKALEYEKLHEIAIGTARGIAYLHEECQHRIIHYDIKPGNILLDENFYPKVADFGLAKLCNRENTHITMTGGRGTPGYAAPELWMPFPITHKCDVYSFGMLLFEIVGRRRNLEIKNSDSQEWFPIWVWKKFDDGLLGEAMIVCGIEEKNKEIAERMVKVALWCVQYRQELRPIMSVVVKMLEGSLEIPKILNPFQHLFDGANFATHSVQVSNTYTTSATSSSVKVSDSSIVCATPIMKKYEIEVASSIV* | 429 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Psa1g3346 | 428 | ProSitePatterns | Protein kinases ATP-binding region signature. | 96 | 118 | IPR017441 | GO:0005524 | |
Psa1g3346 | 428 | Pfam | Protein kinase domain | 94 | 355 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Psa1g3346 | 428 | Gene3D | Transferase(Phosphotransferase) domain 1 | 167 | 369 | - | - | |
Psa1g3346 | 428 | PANTHER | RUST RESISTANCE KINASE LR10-RELATED | 15 | 425 | IPR045874 | GO:0004672 | |
Psa1g3346 | 428 | SMART | serkin_6 | 90 | 360 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Psa1g3346 | 428 | PANTHER | PUTATIVE-RELATED | 15 | 425 | - | - | |
Psa1g3346 | 428 | ProSiteProfiles | Protein kinase domain profile. | 90 | 374 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Psa1g3346 | 428 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 210 | 222 | IPR008271 | GO:0004672|GO:0006468 | |
Psa1g3346 | 428 | SUPERFAMILY | Protein kinase-like (PK-like) | 73 | 361 | IPR011009 | - | |
Psa1g3346 | 428 | Gene3D | Phosphorylase Kinase; domain 1 | 64 | 166 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Psa1g3346 | Psa-Chr1 | 292898950 | 292900733 | Tandem |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Psa1g3346 | 79 | 395 | Receptor kinase-like Gene Family | AT5G38280 | 40.244 | 5.05e-78 | 253 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
PK | RLK-Pelle_RLCK-Os | Psa1g3346 | Pkinase | 8.8e-47 | CL0016 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Psa1g3346 | - | - | gmx:100816921 | 648.277 |