Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g3346 ATGTCAACCAGTTATTCAACCAATGATTCAACCAGTGGTGCTGACGTTGGAGTTGTAGTTGTTATAATCCTAGTAGTAGTTGCTGTTAAAGTAGCTATTTTTGTTTGTGTTTGTAGAAGAATTAATCAAGTAAGAGGTGGATCTAAATCCATTAGTTCCATTAGTCCAGATTCACAATTTATAACTCTCACAATGGATAAATTTCTAAACGACATGGAAAGGGAGAAACCAATAAGATTCACTGGTCAACAGCTAAGAATTGCAACAGACAACTATTCCAACTTGTTGGGATCAGGTGGATTTGGAACTGTTTACAAAGGAGTTTTCAGTAACGGGTCGATGGTAGCTGTGAAGGTTCTTCGCGGTGGTTCTAACAAGAAAATCGACGAACAATTTATGGCAGAAGTCGGAACAATTGGTAGAATTCATCACTTTAATCTCGTTAGGCTATATGGATTTTGCTTTGAAAGAAACTTGATAGCACTTGTTTATGAGTACATGGGAAATGGATCACTTGACAGGTATTTGTTTCACGAAAAAAAGGCGTTAGAATATGAAAAACTTCATGAGATTGCAATCGGTACAGCAAGAGGAATTGCTTACTTGCATGAAGAGTGTCAACATAGAATAATCCACTATGATATAAAGCCAGGAAATATTCTCTTGGATGAGAACTTCTATCCAAAAGTTGCTGATTTTGGTTTGGCGAAACTTTGCAACAGAGAAAATACTCACATTACGATGACCGGAGGAAGGGGGACGCCCGGTTACGCTGCACCTGAGCTTTGGATGCCATTTCCTATAACTCACAAATGTGATGTTTATAGTTTTGGTATGCTATTATTTGAAATTGTAGGTAGAAGAAGAAACCTTGAGATTAAAAATAGTGATAGCCAAGAATGGTTTCCAATTTGGGTATGGAAAAAATTTGATGATGGACTATTAGGGGAAGCAATGATAGTTTGTGGAATAGAAGAGAAAAATAAAGAGATTGCAGAGAGAATGGTTAAGGTAGCTTTATGGTGTGTTCAATATAGACAAGAATTAAGGCCTATAATGAGTGTTGTGGTGAAAATGTTGGAAGGTTCATTAGAAATTCCAAAGATTTTGAACCCTTTTCAACATTTGTTTGATGGAGCTAACTTTGCTACTCACTCAGTGCAAGTGTCAAATACTTACACAACTAGTGCTACTTCTTCTTCTGTTAAGGTTAGTGATTCTAGCATTGTGTGTGCTACTCCAATTATGAAGAAATATGAGATTGAAGTAGCATCTAGCATAGTGTGA 1287 0.3667 MSTSYSTNDSTSGADVGVVVVIILVVVAVKVAIFVCVCRRINQVRGGSKSISSISPDSQFITLTMDKFLNDMEREKPIRFTGQQLRIATDNYSNLLGSGGFGTVYKGVFSNGSMVAVKVLRGGSNKKIDEQFMAEVGTIGRIHHFNLVRLYGFCFERNLIALVYEYMGNGSLDRYLFHEKKALEYEKLHEIAIGTARGIAYLHEECQHRIIHYDIKPGNILLDENFYPKVADFGLAKLCNRENTHITMTGGRGTPGYAAPELWMPFPITHKCDVYSFGMLLFEIVGRRRNLEIKNSDSQEWFPIWVWKKFDDGLLGEAMIVCGIEEKNKEIAERMVKVALWCVQYRQELRPIMSVVVKMLEGSLEIPKILNPFQHLFDGANFATHSVQVSNTYTTSATSSSVKVSDSSIVCATPIMKKYEIEVASSIV* 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g3346 428 ProSitePatterns Protein kinases ATP-binding region signature. 96 118 IPR017441 GO:0005524
Psa1g3346 428 Pfam Protein kinase domain 94 355 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa1g3346 428 Gene3D Transferase(Phosphotransferase) domain 1 167 369 - -
Psa1g3346 428 PANTHER RUST RESISTANCE KINASE LR10-RELATED 15 425 IPR045874 GO:0004672
Psa1g3346 428 SMART serkin_6 90 360 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa1g3346 428 PANTHER PUTATIVE-RELATED 15 425 - -
Psa1g3346 428 ProSiteProfiles Protein kinase domain profile. 90 374 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa1g3346 428 ProSitePatterns Serine/Threonine protein kinases active-site signature. 210 222 IPR008271 GO:0004672|GO:0006468
Psa1g3346 428 SUPERFAMILY Protein kinase-like (PK-like) 73 361 IPR011009 -
Psa1g3346 428 Gene3D Phosphorylase Kinase; domain 1 64 166 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g3346 Psa-Chr1 292898950 292900733 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g3346 79 395 Receptor kinase-like Gene Family AT5G38280 40.244 5.05e-78 253
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-Os Psa1g3346 Pkinase 8.8e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g3346 - - gmx:100816921 648.277