Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g3341 ATGATGGTTGAGAATATGAATAGAAGTAACTTTGAAGTGTTGGGAATGTGTTGTGCTACAGAAGCAACACTTGTTGAAAGAATTCTGAACCCTCTTCATGGTGTCAAACATGTCTCAGTCATTGTTCCTACCAGAACAGTTACTGTGGTTCATGATCTTCTCCTCATTTCCGAATCGCAAATAGTTGATGCGCTGAATACGGCAAGGCTTGAAGCTAGTTGTAGGCCAAAGGGAGAGACCAATAATGAAAAGAAATGGCCAGACATATTTACGATGGCGTGTGGCTTGTTACTCTTACTTTCATTTTTGAAGTATATATGTCCATCTTTGGAATGGTTGGCTCTTGGTTCTGTTGTTATAGGATTCCCTAAAGTTCTATTAAGGGCTATAGCTTCTATTAGAGCTCTTACTCTTAATATCAACATTTTAGTTATATTGGCAGTATGTGGAACTGTTGCTTTACAAGATTTTACAGATGGTGGAGTCATAATCTTTCTCTTCTCCATTGCTCAGTGGCTGGAGACAAGAGCAACTCATAAGGCAATGGTTGCAATGTCTTCTTTAACAAACATGGCTCCTCAAATGGCCATTGTTGTCGAGACCGGGGAACGCGTCGATGTCAATGATGTTAAGATCAACACCATCCTTGCTGTCAAGGCTGGTGAGGCTATTCCTCTTGATGGAGTTGTGGTTGAAGGAAAGTGTGAAGTTGACGAAAAAATGTTAACAGGAGAATCATTCCCTGTCACCAAAGAATCGGATTCACTTGTCTGGGCCGGAACTATTAATATGAATGGATATATAAGTGTAAGAACTACAGTGCTGGCAAAAGACACCGTAGTGGCGAGAATGTCAAGATTTGTTGAAGAAGCTTCTAGCAGAAAATCAAAAGCACAAAGATTCATAGATAATTTTGCAAAATACTATATTCCTGCGGTTGTGTTGATTTCAGCTAGCATTGCAGTGGTTCCAGCTGCATTAAATGTTACTGATATTGAGAATTGGTTTCACCTATCACTTGTTGTTTTATTGAGTGGATGCCCTTGTGCTCTTATTCTCTCCACACCTGTTGCAATCTTTTGTGCTCTCACAAAAGCTGCAATAAGTGGATTACTATTGAAAGGTGGAGATTATCTTGAAACACTTTCCAGAATCAAGACAGTGGCTTTCGATAAAACAGGCACCATAACAAGAGGAGAGTTCGTCGTAACTGATTTTAGTTCTGCAGATGAATTTAACAATGAAACCTTATTGTACTGGATTTCGAGTATTGAGAGTAAATCAAGTCATCCAGTGGCAGGTGCACTGGTTGAATATGCAATGTTGAACTCTATCAAACCAGTCCCGGAAAATGTGGAGAATTTTCAAAATTTTCCGGGGGAAGGAATTTTCGGCAGAATTGATGGGAAGGATATCTACATAGGGAATAGGAGAATTGGTCTCAGAGCTGTCTGTGAAAGAGGTGATTGTATTCAAAGCCATGAGATTTCTTCGTCGAAGAAACAATGCGGCGGAGAAACTCTAGTTGGAGTGTTGAGCCTAGTGGATGCATGCAGAACAGGTGCTTTAGAGGCAATAGAAGAGTTGAAGTTGTTAGGTGTGAGATCAGTCATGTTGACAGGAGATACCTCTCAAGTTGCTATGTATGTTCAGAGTCAGTTAAACAATGCTATAGACATTGTTCATGCGGAGCTTCTACCCCATGATAAGGCAAAAATCATTGAGAATTTGAAAAAAGAAGGGCCAACAGCAATGATAGGAGACGGAATAAACGATGCTCCGGCGTTAGCTACTGCTGACATAGGCATTTCAATGGGAATATCAGGTTCAGCTCTTGCAAATGAGACAAGCCACGCGATTCTCATGTCGAACGACATCCGAAAAGTGCCTGAAGCGATTCGTCTAGCAAGAAAAACAACTAGAAAGCTGATTGAGAATGTGGTCATTTCGGTTGGATTTAAATGCGGCATACTTGCATTGGCAATTGCAGGATATCCATTAGTTTGGCTTGCGGTTTTGACAGATGTTGGAACATGTTTACTTGTGATTCTCAATAGCATGTTGCTTTTACAAGAGAATCACAAATATGAAGAAAGAGAATCGGTTAGGTCTAAATATGGAAAGTTTTTGGAAGATAAGACCAAACCATTACTTAAGAAGCAAAGTAGTATTGATGAAGAAAAAGGACTTATTAGTGGTGAAGAGTGTGGTAAAGAGTGTTGTATAAGTGTTACTCATCATGTGGAAACTTCAAAAGAAAACAAAGATGAATCTTGTGGAGTTTCAAAGATGAGTTTACTCAATGGAAATGATAATGGAAACTTTATGTTTGTTGAAGTTCATGTTGTGAAGCATTGCAATGGTTAA 2367 0.3946 MMVENMNRSNFEVLGMCCATEATLVERILNPLHGVKHVSVIVPTRTVTVVHDLLLISESQIVDALNTARLEASCRPKGETNNEKKWPDIFTMACGLLLLLSFLKYICPSLEWLALGSVVIGFPKVLLRAIASIRALTLNINILVILAVCGTVALQDFTDGGVIIFLFSIAQWLETRATHKAMVAMSSLTNMAPQMAIVVETGERVDVNDVKINTILAVKAGEAIPLDGVVVEGKCEVDEKMLTGESFPVTKESDSLVWAGTINMNGYISVRTTVLAKDTVVARMSRFVEEASSRKSKAQRFIDNFAKYYIPAVVLISASIAVVPAALNVTDIENWFHLSLVVLLSGCPCALILSTPVAIFCALTKAAISGLLLKGGDYLETLSRIKTVAFDKTGTITRGEFVVTDFSSADEFNNETLLYWISSIESKSSHPVAGALVEYAMLNSIKPVPENVENFQNFPGEGIFGRIDGKDIYIGNRRIGLRAVCERGDCIQSHEISSSKKQCGGETLVGVLSLVDACRTGALEAIEELKLLGVRSVMLTGDTSQVAMYVQSQLNNAIDIVHAELLPHDKAKIIENLKKEGPTAMIGDGINDAPALATADIGISMGISGSALANETSHAILMSNDIRKVPEAIRLARKTTRKLIENVVISVGFKCGILALAIAGYPLVWLAVLTDVGTCLLVILNSMLLLQENHKYEERESVRSKYGKFLEDKTKPLLKKQSSIDEEKGLISGEECGKECCISVTHHVETSKENKDESCGVSKMSLLNGNDNGNFMFVEVHVVKHCNG* 789
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g3341 788 SUPERFAMILY HAD-like 387 687 IPR036412 -
Psa1g3341 788 CDD P-type_ATPase_HM 112 688 - -
Psa1g3341 788 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 162 410 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Psa1g3341 788 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 506 666 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Psa1g3341 788 Pfam haloacid dehalogenase-like hydrolase 385 600 - -
Psa1g3341 788 PRINTS Copper-transporting ATPase signature 180 198 - -
Psa1g3341 788 PRINTS Copper-transporting ATPase signature 564 581 - -
Psa1g3341 788 PRINTS Copper-transporting ATPase signature 621 635 - -
Psa1g3341 788 PANTHER CADMIUM/ZINC-TRANSPORTING ATPASE HMA2-RELATED 5 742 - -
Psa1g3341 788 SUPERFAMILY Calcium ATPase, transmembrane domain M 140 383 IPR023298 -
Psa1g3341 788 Gene3D - 178 292 - -
Psa1g3341 788 ProSiteProfiles Heavy-metal-associated domain profile. 8 74 IPR006121 GO:0046872
Psa1g3341 788 SFLD p-type atpase 372 639 IPR044492 -
Psa1g3341 788 ProSitePatterns Hypothetical cof family signature 2. 586 608 - -
Psa1g3341 788 PRINTS P-type cation-transporting ATPase superfamily signature 238 252 - -
Psa1g3341 788 PRINTS P-type cation-transporting ATPase superfamily signature 389 403 - -
Psa1g3341 788 PRINTS P-type cation-transporting ATPase superfamily signature 510 521 - -
Psa1g3341 788 PRINTS P-type cation-transporting ATPase superfamily signature 532 542 - -
Psa1g3341 788 PRINTS P-type cation-transporting ATPase superfamily signature 586 605 - -
Psa1g3341 788 PRINTS P-type cation-transporting ATPase superfamily signature 610 622 - -
Psa1g3341 788 Pfam E1-E2 ATPase 195 367 - -
Psa1g3341 788 Gene3D - 2 75 - -
Psa1g3341 788 TIGRFAM ATPase-IB2_Cd: cadmium-translocating P-type ATPase 140 690 - -
Psa1g3341 788 ProSitePatterns E1-E2 ATPases phosphorylation site. 391 397 IPR018303 -
Psa1g3341 788 PANTHER CADMIUM/ZINC-TRANSPORTING ATPASE HMA4-RELATED 5 742 - -
Psa1g3341 788 Gene3D - 400 518 IPR023299 GO:0000166
Psa1g3341 788 SUPERFAMILY Calcium ATPase, transduction domain A 195 288 IPR008250 -
Psa1g3341 788 CDD HMA 11 73 IPR006121 GO:0046872
Psa1g3341 788 Gene3D - 380 637 IPR023214 -
Psa1g3341 788 TIGRFAM ATPase-IB_hvy: heavy metal translocating P-type ATPase 140 689 IPR027256 GO:0006812|GO:0016021|GO:0019829
Psa1g3341 788 SFLD Haloacid Dehalogenase 372 639 - -
Psa1g3341 788 SUPERFAMILY HMA, heavy metal-associated domain 2 75 IPR036163 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g3341 Psa-Chr1 292687248 292690956 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g3341 1 758 Primary Pumps ATPases AT4G30110 56.516 0.0 875
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g3341 K01534 - gmx:100815324 1198.73