Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g3327 ATGGCGGCTATCTCACTAGAACAGATCAAGAATGAATCTGTTGATCTGGAAAAAATCCCAATTGAGGAAGTGTTTGCGCAATTGAAATGCACCCGAGAAGGTTTGTCCTCTACCGAAGGAGAAAGCAGGATTCAAATATTTGGTCCAAACAAGCTCGAAGAGAAAAAGGAGAGCAAATTTCTCAAGTTTCTTGGGTTTATGTGGAATCCATTATCATGGGTGATGGAAGCTGCAGCTATAATGGCAATTGCTCTTGCAAATGGTGGAGGGCAGCCTCCAGATTGGCAAGATTTTGTCGGAATTGTGTGCTTGTTGGTTATCAATTCAACTATCAGTTTCATTGAAGAAAACAACGCTGGAAATGCGGCTGCTGCTCTTATGGCAGGTCTTGCTCCTAAGACAAAGGTTCTTAGAGATGGTAAATGGAGTGAGCAAGAAGCTGCAATTCTAGTCCCAGGAGACATCATTAGCATCAAACTCGGTGACATCATACCCGCTGATGCTCGTCTTCTAGAAGGTGATCCTTTAAAGGTTGACCAAGCAGCTTTAACAGGAGAATCACTTCCGGTCACTAGACATCCAGGACAAGAAGTTTTCTCAGGCTCAACTTGCAAACAAGGAGAAATCGAAGCTGTTGTTATTGCAACCGGTGTCCACACATTCTTCGGAAAAGCAGCACATTTGGTTGACAATACAAACAATGTTGGACATTTCCAAATGGTTCTCAAATCAATTGGAAACTTTTGTATCTGTTCCATTGCAGTTGGTATGTTGGCTGAGATTATAGTCATGTATCCGATTCAACATCGCAGATATCGCGATGGTATTGACAACCTGTTAGTTCTTTTGATTGGTGGAATTCCTATTGCTATGCCAACTGTTTTGTCTGTGACAATGGCTATTGGTTCTCATAAACTTTCCCAGCAAGGGGCTATTACTAAAAGAATGACTGCCATTGAGGAAATGGCTGGTATGGATGTTCTTTGCAGTGACAAGACAGGAACACTTACACTTAACAAATTGAGTGTTGATAGGAACTTGATTGAGGTTTTTGTTAAGGGTATGGATAAGGAACATGTGATTCTTCTTGCTGCTAGGGCTGCTAGGACTGAAAATCAGGATGCTATTGATGCTGCTATTGTTGGAATGCTTGCCGACCCTAAAGAGGCGAGGGCCGGGATAACAGAGCTGCATTTCTTGCCATTCAATCCAAATGATAAGAGAACTGCTTTGACTTACATTGATAATAAGGATGGAAGTTGGCATAGAGCTAGCAAAGGCGCTCCTGAACAGATTATAGAGTTGTGTAACATGAAGGAAGATGCTAAGAAGAAGATTCATGCAATGATTGAAAAGTTTGCAGAAAGAGGGCTACGTTCACTCGGTGTTGCTAGACAGGAAGTTCCTGAGAAAACAAAGGAAAGTGCTGGTGCTCCATGGCAGTTTGTTGGTTTGTTGTCGGTGTTTGATCCTCCTAGGCATGACAGTGCTGAAACCATTAGACAAGCTCTTAATCTTGGTGTTAATGTTAAGATGATTACAGGTGATCAACTTGCCATAGCTAAGGAAACTGGTAGGAGACTTGGTATGGGAACCAATATGTATCCTTCTGCTACATTGCTTGGTCAAGACAAAGATTCGAGTGTTGCTTCAATGCCAGTAGAAGAGTTGATTGAGAAGGCAGATGGATTTGCTGGAGTTTTTCCAGAACATAAATATGAAATTGTGAAGAAGCTACAAGAGAGGAAGCACATTTGTGGAATGACTGGAGATGGTGTGAATGATGCTCCTGCATTGAAGAAAGCTGATATTGGAATTGCTGTTGCTGATGCCACTGATGCTGCAAGAGGTGCTTCTGATATAGTCTTGACAGAACCTGGTCTGAGTGTTATCATTAGTGCAGTCTTGACAAGTAGAGCTATTTTCCAAAGAATGAAGAACTACACGATCTATGCTGTGTCTATCACTATTCGTATTGTGTTTGGATTTATGTTTATTGCACTGATATGGAAGTTTGATTTCTCTCCATTCATGATTTTGATTATTGCCATTTTGAATGATGGAACCATCATGACGATTTCAAAGGATAGGGTTAAGCCATCTCCATTGCCGGATAGCTGGAAACTGAAAGAAATATTCGCTACTGGAGTCATGCTTGGAGGTTACATGGCATTGATGACTGTGATATTCTTTTGGATAGTGCAGGACACTACATTCTTCCCTGACAGATTTGGAGTTAGACATATTCACGACAACCCTGATGAGTTGACAGCTGCTTTGTATCTACAAGTTAGTATTGTTAGCCAGGCTTTGATCTTCGTAACTCGTTCGCGTAGCTGGTCTTATGTCGAACGCCCCGGGATGCTGTTATTGGGTGCTTTCCTAATTGCTCAACTGATTGCTACATTAATAGCAGTGTATGCTAACTGGGGCTTTGCAAGAATCCAAGGAATTGGTTGGGGTTGGGCCGGAGTCGTTTGGCTCTATAGTATTGTATTCTATATTCCTCTTGACGTCATCAAATTCGCCACTCGCTATTTCTTGAGCGGCAAAGCTTGGTCAAATCTAGAAAACAAGACTGCCTTCACTACCAAGAAAGACTATGGTAAAGGAGAGAGGGAAGCTCAATGGGCTCATGCTCAAAGGACCCTTCATGGACTTGAACCACCAGAAAGTTCTGGTATCTTCCATGAGAAGAACAGTTATAGAGAATTGTCCGAGATTGCCGAGCAGGCCAAGAGACGCGCTGAAGTTGCTAGGCTTCGCGAACTTCATACCCTTAAAGGACATGTTGAATCTGTTGTGAAGCTCAAAGGGTTGGACATTGACACTATACAACAACATTATACTGTGTAA 2856 0.4212 MAAISLEQIKNESVDLEKIPIEEVFAQLKCTREGLSSTEGESRIQIFGPNKLEEKKESKFLKFLGFMWNPLSWVMEAAAIMAIALANGGGQPPDWQDFVGIVCLLVINSTISFIEENNAGNAAAALMAGLAPKTKVLRDGKWSEQEAAILVPGDIISIKLGDIIPADARLLEGDPLKVDQAALTGESLPVTRHPGQEVFSGSTCKQGEIEAVVIATGVHTFFGKAAHLVDNTNNVGHFQMVLKSIGNFCICSIAVGMLAEIIVMYPIQHRRYRDGIDNLLVLLIGGIPIAMPTVLSVTMAIGSHKLSQQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLSVDRNLIEVFVKGMDKEHVILLAARAARTENQDAIDAAIVGMLADPKEARAGITELHFLPFNPNDKRTALTYIDNKDGSWHRASKGAPEQIIELCNMKEDAKKKIHAMIEKFAERGLRSLGVARQEVPEKTKESAGAPWQFVGLLSVFDPPRHDSAETIRQALNLGVNVKMITGDQLAIAKETGRRLGMGTNMYPSATLLGQDKDSSVASMPVEELIEKADGFAGVFPEHKYEIVKKLQERKHICGMTGDGVNDAPALKKADIGIAVADATDAARGASDIVLTEPGLSVIISAVLTSRAIFQRMKNYTIYAVSITIRIVFGFMFIALIWKFDFSPFMILIIAILNDGTIMTISKDRVKPSPLPDSWKLKEIFATGVMLGGYMALMTVIFFWIVQDTTFFPDRFGVRHIHDNPDELTAALYLQVSIVSQALIFVTRSRSWSYVERPGMLLLGAFLIAQLIATLIAVYANWGFARIQGIGWGWAGVVWLYSIVFYIPLDVIKFATRYFLSGKAWSNLENKTAFTTKKDYGKGEREAQWAHAQRTLHGLEPPESSGIFHEKNSYRELSEIAEQAKRRAEVARLRELHTLKGHVESVVKLKGLDIDTIQQHYTV* 952
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g3327 951 PANTHER PLASMA MEMBRANE ATPASE 3 931 - -
Psa1g3327 951 Pfam E1-E2 ATPase 131 308 - -
Psa1g3327 951 SFLD p-type atpase 311 640 IPR044492 -
Psa1g3327 951 Pfam Cation transporter/ATPase, N-terminus 18 81 IPR004014 -
Psa1g3327 951 SUPERFAMILY HAD-like 325 636 IPR036412 -
Psa1g3327 951 Coils Coil 902 922 - -
Psa1g3327 951 Gene3D - 341 489 IPR023299 GO:0000166
Psa1g3327 951 SUPERFAMILY Calcium ATPase, transmembrane domain M 15 849 IPR023298 -
Psa1g3327 951 PANTHER CALCIUM-TRANSPORTING ATPASE 3 931 - -
Psa1g3327 951 ProSitePatterns E1-E2 ATPases phosphorylation site. 331 337 IPR018303 -
Psa1g3327 951 SUPERFAMILY Calcium ATPase, transduction domain A 132 229 IPR008250 -
Psa1g3327 951 SMART Cation_ATPase_N_a_2 15 87 IPR004014 -
Psa1g3327 951 TIGRFAM ATPase-IIIA_H: plasma-membrane proton-efflux P-type ATPase 34 807 IPR006534 GO:0008553|GO:0016021|GO:0120029
Psa1g3327 951 PRINTS H+-transporting ATPase (proton pump) signature 446 464 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Psa1g3327 951 PRINTS H+-transporting ATPase (proton pump) signature 561 577 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Psa1g3327 951 PRINTS H+-transporting ATPase (proton pump) signature 589 605 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Psa1g3327 951 PRINTS H+-transporting ATPase (proton pump) signature 620 645 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Psa1g3327 951 PRINTS H+-transporting ATPase (proton pump) signature 761 782 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Psa1g3327 951 Pfam haloacid dehalogenase-like hydrolase 325 603 - -
Psa1g3327 951 Gene3D - 900 951 - -
Psa1g3327 951 Gene3D - 132 216 - -
Psa1g3327 951 SFLD C1.7: P-type atpase like 311 640 - -
Psa1g3327 951 Gene3D - 94 816 - -
Psa1g3327 951 Gene3D - 326 626 IPR023214 -
Psa1g3327 951 CDD P-type_ATPase_H 34 842 IPR006534 GO:0008553|GO:0016021|GO:0120029
Psa1g3327 951 PRINTS P-type cation-transporting ATPase superfamily signature 179 193 - -
Psa1g3327 951 PRINTS P-type cation-transporting ATPase superfamily signature 329 343 - -
Psa1g3327 951 PRINTS P-type cation-transporting ATPase superfamily signature 484 495 - -
Psa1g3327 951 PRINTS P-type cation-transporting ATPase superfamily signature 506 516 - -
Psa1g3327 951 PRINTS P-type cation-transporting ATPase superfamily signature 589 608 - -
Psa1g3327 951 PRINTS P-type cation-transporting ATPase superfamily signature 612 624 - -
Psa1g3327 951 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 564 679 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Psa1g3327 951 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 101 347 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g3327 Psa-Chr1 291843636 291851477 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g3327 2 951 Primary Pumps ATPases AT2G07560 82.545 0.0 1612
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g3327 K01535 - gmx:100804422 1690.63
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa4g0297 4 18680240 18686232 Psa1g3327 1 291843636 291851477 PCT