Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g3323 ATGGAGTGGGATAGCAATTCCGATCTTAGCGGTGATGAAGACGACGCCGTTTCGTCCTCGTCGTTCCTTCTGAACGACGACGTTGGACCACTTCCTTTTCCGGTTCTTCAAACGGCGCCGTGTGGGTTCGTTGTCACCGACGCGATCGATCCGGACCATCCTATTATATACGTCAACGCCGTTTTTGAGATGCTTACCGGTTATCGTGCTGAAGAAGTTCTCGGTCGTAACTGCCGTTTCTTGCAGTGTCGAGGTCCATTTGCTAAGAGAAGGCATCCATTGGTGGACTCATCAGTAATTTCAGAAATTAGAAAATGCATTGACGAAGGGGTTGAATTTCAAGGTGAGTTGCTGAACTTCAGGAAAGATGGATCTCCACTTATGAACAGACTGCGGCTGACACCTATATATGGAGAAGATGATGAAATAACTCATGTCATTGGAATTCAGTTATTCACCGAGGCAAACATTGATCTTGGTCCTGTTCTCGGTTCTACAATTAAGGACTCTGTTAAATCATCTGGTCGGTTTCGTTCTGTACTTTCCTCACTGCAACCTCTTCCAGTGGGGGACCGGAATGTGACCCGTGGAATTTGTGGGCTATTTCAATTAAGTGATGAGGTATTGTCTCTCAAGATACTTGCTCGCTTAACTCCAAGAGATATTGCATCAGTTAGTTCTGTTTGTACGCGATTGTATGAAGTAACAAGAAATGAAGACCTTTGGAGGATGGTATGCCAAAATGCATGGGGTAGTGAAACTACCCGTGTTTTGGAGACTGTTCCTGGTGCAAGGAGGCTTGGATGGGGTCGACTAGCCAGGGAACTGACCACTCTTGAAGCAGCAGCATGGAGGAAACTGACCGTTGGAGGTGGTGTTGAACCATCACGCTGTAACTTTAGTGCTTGTGCAGTTGGGAATAGAGTTGTCCTATTTGGTGGTGAAGGGGTTAATATGCAACCCATGAATGACACCTTTGTATTGGATCTCAATTCTAATAATCCCGAATGGCAACATGTCCAGGTTAGCTCTCCTCCCCCTGGTCGGTGGGGCCATACACTTTCTTGTGTGAATGGTTCTCGTTTAGTTGTATTTGGAGGCTGTGGAACACAGGGTTTGCTCAATGATGTGTTTGTTCTGGACTTGGATGCAACCCCTCCAACTTGGCGTGAAATTTCTGGATTGGCACCTCCACTTCCAAGATCATGGCATAGCTCTTGTACTCTTGATGGTACTAAGTTGATAGTTTCTGGTGGCTGTGCTGATTCTGGAGTACTTTTGAGTGATACTTTTCTCCTTGATATGTCGATGGAAAACCCTATCTGGAGGGAGATACCAGTGACATGGACACCACCTTCCCGTCTGGGCCACACACTATCTGTTTATGGTGGTAGGAAAATTCTAATGTTTGGGGGTCTGGCCAAGAGTGGTCCCCTGCGTTTCCGGTCAAGTGATGTGTTCACTATGGATTTAAGTGAGGAGGAACCATGCTGGAGATGTGTCACGGGGAGTGGAATGCCTGGTGCTGGCAATCCTGGAGGCATAGCTCCTCCTCCTAGACTTGATCACGTGGCTGTTAGCCTTCCAGGTGGTAGAATTTTGATTTTTGGGGGTTCTGTTGCAGGCCTTCATTCTGCCTCCCAGCTTTACATACTTGATCCAACCGATGAGAAGCCTACATGGAGAATCTTAAATGTACCCGGACGCCCTCCAAGGTTTGCATGGGGCCATAGTACATGTGTTGTTGGGGGGACAAGAGCTATTGTTCTGGGTGGTCAAACCGGGGATGAATGGATGCTAAGTGAACTGCATGAACTTTCCCTGGCAAATTCTGTCATCTAG 1842 0.4718 MEWDSNSDLSGDEDDAVSSSSFLLNDDVGPLPFPVLQTAPCGFVVTDAIDPDHPIIYVNAVFEMLTGYRAEEVLGRNCRFLQCRGPFAKRRHPLVDSSVISEIRKCIDEGVEFQGELLNFRKDGSPLMNRLRLTPIYGEDDEITHVIGIQLFTEANIDLGPVLGSTIKDSVKSSGRFRSVLSSLQPLPVGDRNVTRGICGLFQLSDEVLSLKILARLTPRDIASVSSVCTRLYEVTRNEDLWRMVCQNAWGSETTRVLETVPGARRLGWGRLARELTTLEAAAWRKLTVGGGVEPSRCNFSACAVGNRVVLFGGEGVNMQPMNDTFVLDLNSNNPEWQHVQVSSPPPGRWGHTLSCVNGSRLVVFGGCGTQGLLNDVFVLDLDATPPTWREISGLAPPLPRSWHSSCTLDGTKLIVSGGCADSGVLLSDTFLLDMSMENPIWREIPVTWTPPSRLGHTLSVYGGRKILMFGGLAKSGPLRFRSSDVFTMDLSEEEPCWRCVTGSGMPGAGNPGGIAPPPRLDHVAVSLPGGRILIFGGSVAGLHSASQLYILDPTDEKPTWRILNVPGRPPRFAWGHSTCVVGGTRAIVLGGQTGDEWMLSELHELSLANSVI* 614
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g3323 613 Pfam F-box-like 209 247 IPR001810 GO:0005515
Psa1g3323 613 Gene3D - 200 245 - -
Psa1g3323 613 TIGRFAM sensory_box: PAS domain S-box protein 49 149 IPR000014 -
Psa1g3323 613 Pfam Galactose oxidase, central domain 359 408 - -
Psa1g3323 613 CDD PAS 39 149 IPR000014 -
Psa1g3323 613 Pfam PAS domain 40 149 IPR000014 -
Psa1g3323 613 SUPERFAMILY F-box domain 193 262 IPR036047 GO:0005515
Psa1g3323 613 SUPERFAMILY PYP-like sensor domain (PAS domain) 39 150 IPR035965 -
Psa1g3323 613 SMART pac_2 114 155 IPR001610 -
Psa1g3323 613 Gene3D - 275 476 IPR015915 GO:0005515
Psa1g3323 613 Gene3D - 477 611 IPR015915 GO:0005515
Psa1g3323 613 ProSiteProfiles SRCR domain profile. 215 258 IPR001190 GO:0005044|GO:0016020
Psa1g3323 613 PANTHER BACTERIOOPSIN TRANSCRIPTIONAL ACTIVATOR 1 612 - -
Psa1g3323 613 Pfam Kelch motif 521 568 IPR011498 GO:0005515
Psa1g3323 613 Pfam Kelch motif 454 505 IPR011498 GO:0005515
Psa1g3323 613 Gene3D PAS domain 33 161 - -
Psa1g3323 613 SUPERFAMILY Kelch motif 284 501 IPR015915 GO:0005515
Psa1g3323 613 ProSiteProfiles PAS repeat profile. 48 110 IPR000014 -
Psa1g3323 613 PANTHER ADAGIO PROTEIN 1-LIKE 1 612 - -
Psa1g3323 613 Pfam Galactose oxidase, central domain 297 347 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g3323 Psa-Chr1 291462865 291472507 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g3323 35 151 AGC Kinase Gene Family AT5G58140 39.316 1.72e-20 94.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g3323 K12115 - gmx:100802828 1143.26