Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g3273 GAACCATGTTGGTCCCTTACTGCTCAAAATGCGGATGAAGTTGAAAGATTTTTCAAAGAAACCATTGAAAATAGAGACGAAGGAATTGTAGTAAAAGACCTCAGCTCTAAATGGGAGCCCAGTGACCGCAGTGGAAAATGGCTGAAATTGAAGCCTGAATACGTTCAAGCTGGCTCTGATCTGGATGTACTTATAATAGGTGGCTACTATGGTTCCGGACGACATGGGGGAGAGGTTGCTCAATTCTTGGTGGGCCTTGCAGAGCGTTCATCCCCAAATACACATCCCAAACGGTTTGTCTCCTTTTGCAGAGTTGGTACTGGACTTTCTGATGACGAGCTTGAAGCAGTAGTAACCAAACTGAAACCTTACTTCAGAAAGTATGAGTATCCAAAGAAGAGGCCACCGAGTTTTTATCAAGTTACTAATCATTCCAAAGAAAGACCTGATGTGTGGGTCGATAGCCCTGAAAAATCAATTATTCTGTCTATAACCAGTGATATCCGAACTATAGAATCTGAGGTATTCTCTGCACCTTACTGTCTGAGATTTCCTCGGATTGACAGGGTGAGATATGACAAGGCTTGGCATGAGTGCCTTGATGTACAATCATTTATAGAATTGGTGCAATCTAGCAATGGTACCACACAGAGGGATACAGAATACGGGAACAAGATGGGCAGTAAACAAAAACACATGAAATCCTCTATAAAGGGAGAAAAGAAAAATGTGTTAATTGTTCCTTCTCATTTAAGTCAAACAGATGTTTCCAGTGTTAAGGGAGGTTCCTTAATGTTTTCAAATATGATGTTCTATTTTGTCAATGTCCCTCCATCTCATTCTCTCGAGTCCTTCCACAAATTAGTTGCTGAGAATGGCGGCACTTTCTCAATGAATTTGAATAACTCAGTCACCCATTGTGTTGCAGCAGACAGCAAGGGGTTTAAATTTGAAGCAGCAAAACGTCGTGGTGATATCATTCATTATACCTGGGTACTAGATTGCTATGCACAAAAGAAACTCATCCGCTTACAGCCGAAATACTTCCTCTTCCTATCTGAAGAGACCAAGAAGAAGCTACAAGAAGAAATTGACGAGTTCTCGGACTCTTACTACTTGGATCTCAATCTTGGAGACATCAAACAGCTCTTAGGCAATATTAATAGGTCAGAAGATGTCAGTACTGTCGATCATTACAGGAAAAAATACTGCCCAAAGGATAAGTGGTCTGTCTTCAATGGATGCTCCATTTATTTCAAAAACACAATGCAATCATTGAAAGAAGATTGGCAATATTTATTGGAACTTTCTTCAAAGAGACTCAAGCTTGAAGTTCTCATGGGTGGTGGAAAATACACCTCTAATCTCAATTTTGCAACTCATGTAGTGGCTTTGTTCACACCAAGTTATCATACCAACTATGAAGAAGAAATACAGAGCAGTTTCACTTCAATTGAGAGAAAACTATTCCGGAGCAAGAGGTTGCATGTAGTTAATTCCAAGTGGTTAGAAGATTGTTTGAACAGTTGCCAAAGATTATCAGAGGACACGTATAGCTTGAAGTCCTATGGAATAGAAGAGTCAACTGCTGAGGATTGTGAACATGACTTGGCGGTGGATGCTCATCTGGTTGAAGATAATGTAGGAAACCAAAATGAATCTTTCTCTAATAAGGGAAGTAAACAGAGTAGTGCAAAAGCTGTTTCTCAAGACAGTTTGGGTTTGGCATCACAAGGGGCCCATGGTCAAAGGAAACGAGGAAGACCTGCAAGCAGAGGTGTTAAAAAAATAAAACCAGACGGAAACCAAGCTCGAAGAGCAAGATCACAGATTGCAAAAAAACGCGCTAAAATAAGTGAATATGAATCAGATGAAAGTGATTCTCTTGAGAAAAGACCATATGAGCAAGAGGTTGACATTACAGAAGGAAGTTCTGGATTTCACAATGAACAGTCAGAACTACACGAGACTGAGAAAACTCGCAATGTCCAAGGTACTGAAGGAGTAGAAATTTCTGAACAAAACAAGAAAGTTGAGCTAGAGGATTTCAACTACAACCAAGATGAAAATATGCTGGCTCCTGAAATCGGATTGGATGATGGGCACAATGACCAAAGCAGTCAGGTGACTGAGAAGCTTGAAATTATGACTGATCCTATGCAGGCAATGTTACTTGATATGATTCCTAGTCTTGCTATGAATAAAGTTGAGCAACCTACGAATCATCGTGTTGAAGAGGAGAAGCGACGGGAAATCTCCAAGGAAGAGCCTTCGGGTACAAAGAAAAAGAAAGTTAGTTTCAAGGCTATGGCTGCTGACTTGCTCAAGGATTGGTAG 2337 0.4048 EPCWSLTAQNADEVERFFKETIENRDEGIVVKDLSSKWEPSDRSGKWLKLKPEYVQAGSDLDVLIIGGYYGSGRHGGEVAQFLVGLAERSSPNTHPKRFVSFCRVGTGLSDDELEAVVTKLKPYFRKYEYPKKRPPSFYQVTNHSKERPDVWVDSPEKSIILSITSDIRTIESEVFSAPYCLRFPRIDRVRYDKAWHECLDVQSFIELVQSSNGTTQRDTEYGNKMGSKQKHMKSSIKGEKKNVLIVPSHLSQTDVSSVKGGSLMFSNMMFYFVNVPPSHSLESFHKLVAENGGTFSMNLNNSVTHCVAADSKGFKFEAAKRRGDIIHYTWVLDCYAQKKLIRLQPKYFLFLSEETKKKLQEEIDEFSDSYYLDLNLGDIKQLLGNINRSEDVSTVDHYRKKYCPKDKWSVFNGCSIYFKNTMQSLKEDWQYLLELSSKRLKLEVLMGGGKYTSNLNFATHVVALFTPSYHTNYEEEIQSSFTSIERKLFRSKRLHVVNSKWLEDCLNSCQRLSEDTYSLKSYGIEESTAEDCEHDLAVDAHLVEDNVGNQNESFSNKGSKQSSAKAVSQDSLGLASQGAHGQRKRGRPASRGVKKIKPDGNQARRARSQIAKKRAKISEYESDESDSLEKRPYEQEVDITEGSSGFHNEQSELHETEKTRNVQGTEGVEISEQNKKVELEDFNYNQDENMLAPEIGLDDGHNDQSSQVTEKLEIMTDPMQAMLLDMIPSLAMNKVEQPTNHRVEEEKRREISKEEPSGTKKKKVSFKAMAADLLKDW* 779
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g3273 778 Coils Coil 604 624 - -
Psa1g3273 778 SUPERFAMILY BRCT domain 265 350 IPR036420 -
Psa1g3273 778 Gene3D DNA ligase/mRNA capping enzyme 1 53 - -
Psa1g3273 778 PANTHER DNA LIGASE 4 7 521 IPR029710 GO:0003677|GO:0003910|GO:0005524|GO:0006281|GO:0051103
Psa1g3273 778 MobiDBLite consensus disorder prediction 739 765 - -
Psa1g3273 778 MobiDBLite consensus disorder prediction 649 663 - -
Psa1g3273 778 Pfam BRCT domain, a BRCA1 C-terminus domain 264 346 IPR001357 -
Psa1g3273 778 Gene3D BRCT domain 276 389 IPR036420 -
Psa1g3273 778 ProSiteProfiles ATP-dependent DNA ligase family profile. 5 88 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Psa1g3273 778 SUPERFAMILY BRCT domain 402 521 IPR036420 -
Psa1g3273 778 MobiDBLite consensus disorder prediction 552 577 - -
Psa1g3273 778 MobiDBLite consensus disorder prediction 613 638 - -
Psa1g3273 778 Gene3D BRCT domain 407 520 IPR036420 -
Psa1g3273 778 Gene3D - 54 215 IPR012340 -
Psa1g3273 778 ProSiteProfiles BRCT domain profile. 407 520 IPR001357 -
Psa1g3273 778 MobiDBLite consensus disorder prediction 552 674 - -
Psa1g3273 778 SMART BRCT_7 416 510 IPR001357 -
Psa1g3273 778 SMART BRCT_7 263 339 IPR001357 -
Psa1g3273 778 MobiDBLite consensus disorder prediction 736 765 - -
Psa1g3273 778 ProSiteProfiles BRCT domain profile. 261 349 IPR001357 -
Psa1g3273 778 CDD BRCT_DNA_ligase_IV_rpt1 265 351 - -
Psa1g3273 778 SUPERFAMILY Nucleic acid-binding proteins 59 210 IPR012340 -
Psa1g3273 778 CDD OBF_DNA_ligase_IV 58 202 - -
Psa1g3273 778 ProSitePatterns ATP-dependent DNA ligase signature 2. 27 51 IPR016059 GO:0003909
Psa1g3273 778 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 6 51 - -
Psa1g3273 778 Pfam ATP dependent DNA ligase domain 7 51 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Psa1g3273 778 CDD BRCT 439 506 - -
Psa1g3273 778 Pfam ATP dependent DNA ligase C terminal region 76 194 IPR012309 GO:0003910|GO:0006281|GO:0006310
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g3273 Psa-Chr1 287075614 287081396 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g3273 5 211 Core DNA Replication Machinery Family AT1G08130 29.302 9.06e-19 89.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g3273 K10777 - gmx:100816002 1158.28