Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g3272 ATGGAGAATATTGATGAAGAGTACAAACATTACTGGGAGACCAACATGTTCCTCCAAACCCAAGAGCATCTTGATAGCGTTTTTCAGGATATCTACGATTCAAGCTCCCCAGATGGTGGAGCTTCATCTAAGAACATTGTTTCTGAGAGAAATAGAAGGAACAAACTCAATCAAAGACTCTTTGCACTTAGAGCAGTGGTCCCCAACATTAGCAAGATGGATAAGGCTTCAATAGTTAAGGATGCAATTGAGTACATACAACACTTGCATGAACAAGAGAAGAATCTTGAAGCTGAGATAATGGAACTTCAAACTGGGATGCCAAATAATAATATTACTCAAAATTATGATTTCGATCAAGAGCTTCCAGTGTTGCTGAGGTCGAAGAAGAAGAGAACAGATGAATTGTATGATTCTGTCAGTTCAACAAACTCTCCAATTCAGCTTCTTGAGCTTAGGGTTACATATATGGGAGAGAATACAATAGTTGTGAGCTTGACATGTAGCAAAAGGACAGACACAATGGTTAAATTATGTGAAGTGTTTGAATCTTTAAACCTTAAAATTATCACTGCCAATATCACTTGTTTTTCTGGCACACTTTAA 606 0.3729 MENIDEEYKHYWETNMFLQTQEHLDSVFQDIYDSSSPDGGASSKNIVSERNRRNKLNQRLFALRAVVPNISKMDKASIVKDAIEYIQHLHEQEKNLEAEIMELQTGMPNNNITQNYDFDQELPVLLRSKKKRTDELYDSVSSTNSPIQLLELRVTYMGENTIVVSLTCSKRTDTMVKLCEVFESLNLKIITANITCFSGTL* 202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g3272 201 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 40 89 IPR011598 GO:0046983
Psa1g3272 201 Pfam Helix-loop-helix DNA-binding domain 47 90 IPR011598 GO:0046983
Psa1g3272 201 SMART finulus 46 95 IPR011598 GO:0046983
Psa1g3272 201 PANTHER TRANSCRIPTION FACTOR BHLH35 1 201 - -
Psa1g3272 201 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 38 106 IPR036638 GO:0046983
Psa1g3272 201 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 1 201 - -
Psa1g3272 201 Coils Coil 79 106 - -
Psa1g3272 201 Gene3D - 39 105 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g3272 Psa-Chr1 287072030 287072938 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g3272 1 201 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G57150 60.190 1.13e-77 230
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Psa1g3272 HLH 9.8e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g3272 - - gmx:100817978 305.064