Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g3268 ATGCGGGATACTGAGAAGTTAAATAACCGAGGATCTACAAAAGCCGGTAACTCGAAGGAACATATCAAGTTAAAGGTAGATTCACCGCAAATCAAAAGAAGCAGCACGAAAAGCCAAGGGAAGAAACGGAAACTGAAATCAAAATCTCATAAACTCAGAGGTTCCACAAATGGGTTGGCAAAAACAGCTATTGATTCTTCTGTCAAGGCGCCAAACAACAATTCTTCAAATAAAAGATTGATTATTCGACAAAATCTACATAAAACTGATAGGAGTTCGGAACAGGTTCAGCCTACGATAAAGATACAAGGAGGAAAAAATTCTCCGAATAATGATAGGGAAGGCGAGAAAAATGTTGATCAAGAGACAAATATTCAAAAACGGAAGAGAAGAAGAAGAAAAAAGAAAAGACAAAGACTTAACGAAGATCTTGATGACACTTCGCGGCTTCAGAGAAGAACAAGGAATCTGTTAATCAGAATGAAGCTAGAGCAGAACCTTATTGATGCTTACTCAGGAGAAGGTTGGAAAGGTCAGAGTCGAGAGAAGATTAGGCCGGAAAAGGAGCTACAAAGAGCAAAGAAGCAGATTATAAAATGCAAGCTTAGTATCCGCGATGCCATTCGCCAGCTAGATTCTCTAAGTTCAGTTGGTAGCATCGAAGGTTCTGTTATTGCTACAGATGGATCTGTTTATCATGAACATATATTCTGTGCGAATTGCAAGATGCGTGAAGCTTTTCCAGATAATGATATTATACTCTGCGACGGCACATGCAACCGCGCGTTTCACCAAAGGTGTCTTGATCCTCCTTTGGATACTGAAAACATTCCTCCCGGAGATCAAGGCTGGTTTTGCAAGTTTTGTGAATGTAAGATAGAAATACTCGAGGCCACAAACGCGCATCTCGGGACTCGTTTCTCCTTAGACAGTACTTGGCAGGATGTATTCAAGGAAGAAGCTGCTATTCCTGATGGTGACACGGGATTACTAAACCAAGAAGAAGAATGGCCCTCAGATGATCCTGAAGACGATGACTATAATCCAGAGATGAAAGAAGATAGCCACGGTGGCAACAACACAGATGGAAATGATGATAACGCATCCGATGATTCGAGTAGTTCTGGTAGCATGTGGTCATTAAATGGAGAATGTTCTCTGTTAGATGAAGGCCTTGAATATTATTCTGTTAGTCATGGCCACATAGATTCCGATGAATCCGGAGAAATTGCCTGTGGTCGTAGGCAGCGTACAGCTGTTGACTACAGGAAACTTTATGATGAGATGTTTGGGAAGGATGCTCAATATGAACAAGTGAGTGAAGACGAAGACTGGGGTCCAGGAAAAAGACCACGAACAGAAAAGGAGTCTGATGCTGTTAATACTCTTATGACTCTGCATGAGATTGAAAATACACATCCGAATAATGAAAATAAACATCCGAATAATGAGAACAATTTTAGAATACGAGGGAACTCTTCCGGCATAAAAAGACCTTGCTTCAGGATTCCACATGATGCAGTTGAGAAGCTTCGCCAAGTTTTTGCAGAGAATGAGCTTCCTCCGAAATCCGTGAAGGATGCCCTTTCGAAAGAGTTGGGACTCGACGGTGCAAAGGTTAACAAATGGTTCAAAAATGCACGATACACGGCACTTAAAACTCGAAAGTATCGAGAAGGAGGAAAACAGATACAGAGTTTCACTTCTAAGACCTCAAAGGATTGTACATCACAACAGGTACAGGAAGATGGAATTTTGAAACCGAAGGTCAAGAAAATTACCGTGATTCGTTCCGTTAAGAAGTGTGAAAATGTTACTGGCAAAGAGAAAACAAAGGCATCTAGCAGTCTTTTGAAGAAAAAGAAACCAGAAATACCTCCACCCTCGAGAGAAAATGGCAACAAGGATTCGGTGGAGGACAATGGCGATGTAAGCTTGATGGAACTATTGAAAGAAAGGAAAAAGAAGGTAACTTTTGCATTTGAAGGAGACACTGAGGAAGCAGAGTTGGAGCTTGAAAGACTGACCAAATTGAAGATGAAAGTAGATAGATTGAAGCAAAGATTAACTCAAGTTCAAAAATACAGATCAAAGGGTTCAGAAGATGAAGTTTGTTTGAATGAGCCATCTATTATTTATGTGCCTGTAGCTGATATGCTGCTGCTGACAGCATACTTCAAATTCGCCATGCCAATTGATTTTCAAATGCTCTTGGCCAATGAAGAGCATCCAATTCCTTACTTGTTCCAGAAGAATACATCTGCGTCTGACCAACCGAAACCTCAACAAAGCACAACTCCTCACGAAAAGCAGCTGAACCTTCGTCTTGGCCGAAACAAAGCCGCTCCCGGTCACCACATCCATTCACATTCACCTACCCAAAACATAATATGGGATTCAAAAACCATTGAGATAAACAGCAATTCAAGCACTTGGATTTGGTGTTCAACCAGTGCACTTAGATTTGGTGTTCAACCAGTTCAACAACATGCTTTGCACAAATTCAAATGTTTGATAGGCAAAAACAACCTTGTTGTTAAATATTTTATTGTATTTTGA 2559 0.4064 MRDTEKLNNRGSTKAGNSKEHIKLKVDSPQIKRSSTKSQGKKRKLKSKSHKLRGSTNGLAKTAIDSSVKAPNNNSSNKRLIIRQNLHKTDRSSEQVQPTIKIQGGKNSPNNDREGEKNVDQETNIQKRKRRRRKKKRQRLNEDLDDTSRLQRRTRNLLIRMKLEQNLIDAYSGEGWKGQSREKIRPEKELQRAKKQIIKCKLSIRDAIRQLDSLSSVGSIEGSVIATDGSVYHEHIFCANCKMREAFPDNDIILCDGTCNRAFHQRCLDPPLDTENIPPGDQGWFCKFCECKIEILEATNAHLGTRFSLDSTWQDVFKEEAAIPDGDTGLLNQEEEWPSDDPEDDDYNPEMKEDSHGGNNTDGNDDNASDDSSSSGSMWSLNGECSLLDEGLEYYSVSHGHIDSDESGEIACGRRQRTAVDYRKLYDEMFGKDAQYEQVSEDEDWGPGKRPRTEKESDAVNTLMTLHEIENTHPNNENKHPNNENNFRIRGNSSGIKRPCFRIPHDAVEKLRQVFAENELPPKSVKDALSKELGLDGAKVNKWFKNARYTALKTRKYREGGKQIQSFTSKTSKDCTSQQVQEDGILKPKVKKITVIRSVKKCENVTGKEKTKASSSLLKKKKPEIPPPSRENGNKDSVEDNGDVSLMELLKERKKKVTFAFEGDTEEAELELERLTKLKMKVDRLKQRLTQVQKYRSKGSEDEVCLNEPSIIYVPVADMLLLTAYFKFAMPIDFQMLLANEEHPIPYLFQKNTSASDQPKPQQSTTPHEKQLNLRLGRNKAAPGHHIHSHSPTQNIIWDSKTIEINSNSSTWIWCSTSALRFGVQPVQQHALHKFKCLIGKNNLVVKYFIVF* 853
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g3268 852 MobiDBLite consensus disorder prediction 361 377 - -
Psa1g3268 852 MobiDBLite consensus disorder prediction 91 109 - -
Psa1g3268 852 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 229 286 IPR013083 -
Psa1g3268 852 Pfam Homeodomain 505 549 IPR001356 GO:0003677
Psa1g3268 852 PANTHER POLYCOMB PROTEIN PCL 13 694 - -
Psa1g3268 852 ProSitePatterns Zinc finger PHD-type signature. 238 289 IPR019786 -
Psa1g3268 852 MobiDBLite consensus disorder prediction 16 30 - -
Psa1g3268 852 SUPERFAMILY FYVE/PHD zinc finger 229 294 IPR011011 -
Psa1g3268 852 MobiDBLite consensus disorder prediction 36 51 - -
Psa1g3268 852 MobiDBLite consensus disorder prediction 322 377 - -
Psa1g3268 852 MobiDBLite consensus disorder prediction 110 126 - -
Psa1g3268 852 ProSiteProfiles 'Homeobox' domain profile. 494 554 IPR001356 GO:0003677
Psa1g3268 852 SMART PHD_3 237 290 IPR001965 -
Psa1g3268 852 CDD homeodomain 497 549 IPR001356 GO:0003677
Psa1g3268 852 MobiDBLite consensus disorder prediction 52 82 - -
Psa1g3268 852 Coils Coil 668 695 - -
Psa1g3268 852 MobiDBLite consensus disorder prediction 334 348 - -
Psa1g3268 852 MobiDBLite consensus disorder prediction 437 457 - -
Psa1g3268 852 Gene3D - 496 560 - -
Psa1g3268 852 CDD PHD_PRHA_like 237 289 IPR045876 -
Psa1g3268 852 Pfam PHD-finger 237 292 IPR019787 -
Psa1g3268 852 PANTHER POLYCOMB-LIKE TRANSCRIPTION FACTOR 13 694 - -
Psa1g3268 852 MobiDBLite consensus disorder prediction 1 147 - -
Psa1g3268 852 SUPERFAMILY Homeodomain-like 491 556 IPR009057 -
Psa1g3268 852 ProSiteProfiles Zinc finger PHD-type profile. 235 292 IPR019787 -
Psa1g3268 852 MobiDBLite consensus disorder prediction 607 641 - -
Psa1g3268 852 SMART HOX_1 496 558 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g3268 Psa-Chr1 286807005 286810897 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g3268 143 556 Homeobox Transcription Factor Family AT4G29940 58.571 5.73e-151 460
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-PHD Psa1g3268 Homeodomain 1e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g3268 - - gmx:100787118 882.478
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa1g3268 1 286807005 286810897 Psa1g3268 1 286807005 286810897 ECH