Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g3258 ATGACCCCCTATTCAATTGAACGAGTACAAGCATTTCTTGGAGACCAACATGTTCCTCCAAACCCAAGGCATCTTGATAGCTGGGGATTGGATGAGGCGTTTTCAGGATACTACGATTCAAGCTCCCCAGATGGTGGAGCTTCATCTAAGAACATTTTTCTGAGAGAAATAGAAGAACAAACTCAATCAAAGCTCTTTGCACTTAGAGCAGTGGTCCCCAACATTAGCAAGATGGATAAGGCATCGATTATTAAGGATGCAATTGAGTACATACAGCACTTGCATGAACAAGAGAAGAAGATTGAAGCTGAGATAATGGAACTTCAGTCTGGAATGCCAAATAATATTAATCCAAATTATGATTTTGATCAAGAGCTTCCTGTGTTGCTAAGATCCAAAAAGAAGAGAAAGCAGATCAATTGTATGATTCTCTCCAATTCAACAAACTCTCCAATTGAACTTCTTGAGCGCTTGATGTACTCACCCTCCAAGCCTCGCTTGAGAGACTCACCTCGTTTGAGAGACTCAATCCTCAAGCCTCGCTTTAGGGAATCGCCTTCCAAGCCTCATTTGAGGAACTCGTCCTATAAGCCTCACTCTAGCTCCCCAGATGGTGGAGCTTCATCTAAGAACATTGTTTCTGAGAGAAATAGAAGGAACAAACTCAATCAAAGACTCTTTGCACTTAGAGCAGTGGTCCCCAACATTAGCAAGATGGATAAGGCATCGATTATTAAGGATGCAATTGAGTACATACAGCACTTGCATGAACAAGAGAAGAAGATTGAAGCTGAGATAATGGAACTTCAGTCTGGAATGCCAAATAATATTAATCCAAATTATGATTTTGATCAAGAGCTTCCTGTGTTGCTAAGATCCAAAAAGAAGAGAACAGATCAATTGTATGATTCTCTCAATTCAACAAACTCTCCAATTGAACTTCTTGAGCTTAGGGTTACATATATGGGAGAGAATACAATTGTTGTGAGCTTAACATGTAGCAAAAGGACAGACACAATGGTTAAACTATGTGAAGTGTTCGAATCTTTGAACCTTAAAATCATCACTGCCAATATCATTTGTTTTTCTGGCAAGCTTTTGAAGACAGTCTTTATTCAGGCAAATGAAGAAGACAAAGATCTATTGCAGATTAAGATTCAAACAGCTATTGTAGCTCTTAATGATCCTCTAAGTCCTACGAGCATCTAA 1209 0.3921 MTPYSIERVQAFLGDQHVPPNPRHLDSWGLDEAFSGYYDSSSPDGGASSKNIFLREIEEQTQSKLFALRAVVPNISKMDKASIIKDAIEYIQHLHEQEKKIEAEIMELQSGMPNNINPNYDFDQELPVLLRSKKKRKQINCMILSNSTNSPIELLERLMYSPSKPRLRDSPRLRDSILKPRFRESPSKPHLRNSSYKPHSSSPDGGASSKNIVSERNRRNKLNQRLFALRAVVPNISKMDKASIIKDAIEYIQHLHEQEKKIEAEIMELQSGMPNNINPNYDFDQELPVLLRSKKKRTDQLYDSLNSTNSPIELLELRVTYMGENTIVVSLTCSKRTDTMVKLCEVFESLNLKIITANIICFSGKLLKTVFIQANEEDKDLLQIKIQTAIVALNDPLSPTSI* 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g3258 402 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 206 255 IPR011598 GO:0046983
Psa1g3258 402 PANTHER TRANSCRIPTION FACTOR BHLH35 196 396 - -
Psa1g3258 402 PANTHER TRANSCRIPTION FACTOR BHLH35 25 156 - -
Psa1g3258 402 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 204 272 IPR036638 GO:0046983
Psa1g3258 402 Gene3D - 207 277 IPR036638 GO:0046983
Psa1g3258 402 Gene3D - 54 116 IPR036638 GO:0046983
Psa1g3258 402 SMART finulus 212 261 IPR011598 GO:0046983
Psa1g3258 402 SMART finulus 55 100 IPR011598 GO:0046983
Psa1g3258 402 MobiDBLite consensus disorder prediction 191 213 - -
Psa1g3258 402 MobiDBLite consensus disorder prediction 167 190 - -
Psa1g3258 402 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 25 156 - -
Psa1g3258 402 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 196 396 - -
Psa1g3258 402 Coils Coil 252 272 - -
Psa1g3258 402 MobiDBLite consensus disorder prediction 165 217 - -
Psa1g3258 402 Coils Coil 91 111 - -
Psa1g3258 402 Pfam Helix-loop-helix DNA-binding domain 213 256 IPR011598 GO:0046983
Psa1g3258 402 Pfam Helix-loop-helix DNA-binding domain 62 95 IPR011598 GO:0046983
Psa1g3258 402 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 60 111 IPR036638 GO:0046983
Psa1g3258 402 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 45 94 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g3258 Psa-Chr1 286108507 286118126 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g3258 200 373 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G57150 67.232 5.54e-70 218
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Psa1g3258 HLH 6.2e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g3258 - - gmx:100817978 315.464