Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g3249 ATGTTTATGTGGGATGCTTGCAAGGATCTGACCTTGGTTATTTTAATGGTAGCTGCAGCAGCTTCATTGGCACTGGGGATAAAATCTGAGGGTATTAAGGAAGGATGGTATGATGGGGGAAGCATTGCTTTCGCAGTTATTCTTGTTATTGTTGTTACAGCTGTAAGTGATTATAAGCAGTCTCTTCAGTTTCGAGACCTAAATGAAGAGAAGAGAAATATACACTTGGAGGTTGTTAGAGGTGGTAGAAGGGTTGAGATCTCAATATATGATCTTGTTGTTGGGGATGTTATTCCTCTTAATATTGGTAACCAGGTCCCTGCTGATGGAATTGTGATCAGTGGTCACTCTCTTTCCATTGATGAATCGAGCATGACAGGGGAGAGCAAAATTGCCGACAAGGATTCTAAGGATCCCTTTCTGATGTCCGGCTGTAAGGTTGCAGATGGCAGTGGTACTATGCTGGTAACGGGTGTTGGAATTAATACTGAATGGGGCCTTCTAATGGCTAGCATTTCAGAAGATACTGGTGAAGAAACACCTCTGCAGGTCCGCTTGAATGGCGTAGCCACCTTCATTGGTATTGTTGGACTCACTGTTGCTGTTATTGTCCTGATTGTGCTACTGGCCAGATATTTCTCTGGGCATTCGAAGAATAATGATGGGACAAGACAGTTTACAGCTGGCAGGACCACAGCTAGTGATGCCGTTGATGGAGCAATTAAGATAATAACTGTTGCGGTCACCATTGTAGTTGTTGCAGTGCCCGAGGGGCTCCCGCTTGCAGTCACTTTAACTCTGGCCTACTCAATGCGGAAAATGATGGCAGATAAAGCTTTGGTGAGGAGGCTTTCTGCATGTGAAACAATGGGCTCTGCTACAACGATATGCAGCGATAAGACCGGCACATTGACTATGAATCAGATGACTGTGGTTGAGGTTTATGCTGGGGGCAGTAAGATTGATCCACCTCACCAATTGGAGAGTTCTCCTAAGCTACGCACTCTACTCATTGAAGGTGTTGCACAGAACACTAATGGCAGCGTTTTTGTCCCTGAGGGTGCTAATGAAGTTGAGGTTTCTGGATCGCCAACAGAAAAAGCAATTTTACACTGGGCACTAAAGGTTGGGATGAATTTCGTGAATGCTCGGTCAGAATCATCAATTCTTCATGTCTTTCCGTTCAACTCAGAGAAAAAGAGAGGCGGAGTTGCAATACAGACGGCTGACTCTGTTCATATACATTGGAAAGGTGCTGCTGAGATTGTTCTAGCCTGCTGTACAGGGTATATTGATAGAAATGACCAGTTGGTGGAAATAGATGAAGAGAAGATGACTTATTTCAGAAAAGCTATTGAAGACATGGCTTCTGATAGTCTACGTTGCGTTGCCATTGCATATAGACCATATGAGGAAGAAGTTCCAGATACTGAGGAACAACTTGCTCACTGGTCTTTGCCAGAGGATGGACTTGTTTTACTAGCTATTGTTGGTATCAAGGATCCTTGTCGACCTGGTGTCAAAGATTCAGTACAGCTTTGCCAAAAAGCCGGGGTTAAGGTAAGGATGGTCACGGGTGACAATGTCAAAACTGCAAAAGCAATTGCTGTGGAATGTGGAATACTTAGCTCACTTGCTGATGCTACAGAGAGAAATGTCATTGAAGGAAAAACATTTCGAGCCTTGTCAGATTCAGAGAGAGAAGAAATTGCAGATTCGATATCGGTTATGGGAAGGTCATCTCCCAATGATAAACTATTGTTAGTACAAGCATTAAGGAGGAAGGGCCATGTTGTGGCTGTAACCGGGGATGGAACGAATGATGCTCCTGCACTTCACGAGGCGGATATTGGTCTTGCTATGGGTATTGCTGGCACGGAAGTTGCCAAAGAGAGCTCTGATATCATTATATTGGATGACAACTTTGCTTCAGTTGTAAAGGTTGTCAGATGGGGTCGGTCTGTTTATGCAAATATTCAGAAATTTATCCAGTTTCAGCTGACAGTCAATGTGGCAGCTCTTGTTATAAATGTTGTTGCTGCAGTTTCCTCCGGTGAAGTTCCACTGAATGCAGTGCAGCTTCTCTGGGTGAATCTTATCATGGATACTCTGGGAGCACTAGCTTTGGCAACTGAACCACCAACTGATCACCTCATGGATCGGACTCCTGTGGGTCGAAGGGAACCTCTCATAACAAATATCATGTGGAGGAATTTGCTGATACAGGCGATGTATCAAGTGTCGGTTTTGCTTGTTCTCAATTTCCAAGGTGTACGCATATTGGGTCTTGAGCATCAAAAAAGTGAACATGCTATCAAAGTAAAGAACACTTTGATCTTCAATGCTTTTGTTATCTGTCAAGTCTTCAATGAATTTAATGCTCGTAAGCCAGATGAATTCAACATTTTTAAAGGAGTCACTAGAAACTTCCTCTTTATGGGAATAGTGGCATTTACTGTTGTACTTCAGGTTATCATTGTTGAATTTCTTGGGAAGTTCACTAAAACTACTCGGCTTAATTGGCAGCAGTGGCTCATTTCTGTCGTTATTGGATTCATTGGTTGGCCTCTTGCCGTGGTTGGGAAATTGATACCAGTACCAGCAACTCCCATCAACAACGTTTTCTCCAAGATTCGAAGAACTAAAAAAAGTAAAGAACCTGTGGCTTCTCAGTAG 2676 0.4327 MFMWDACKDLTLVILMVAAAASLALGIKSEGIKEGWYDGGSIAFAVILVIVVTAVSDYKQSLQFRDLNEEKRNIHLEVVRGGRRVEISIYDLVVGDVIPLNIGNQVPADGIVISGHSLSIDESSMTGESKIADKDSKDPFLMSGCKVADGSGTMLVTGVGINTEWGLLMASISEDTGEETPLQVRLNGVATFIGIVGLTVAVIVLIVLLARYFSGHSKNNDGTRQFTAGRTTASDAVDGAIKIITVAVTIVVVAVPEGLPLAVTLTLAYSMRKMMADKALVRRLSACETMGSATTICSDKTGTLTMNQMTVVEVYAGGSKIDPPHQLESSPKLRTLLIEGVAQNTNGSVFVPEGANEVEVSGSPTEKAILHWALKVGMNFVNARSESSILHVFPFNSEKKRGGVAIQTADSVHIHWKGAAEIVLACCTGYIDRNDQLVEIDEEKMTYFRKAIEDMASDSLRCVAIAYRPYEEEVPDTEEQLAHWSLPEDGLVLLAIVGIKDPCRPGVKDSVQLCQKAGVKVRMVTGDNVKTAKAIAVECGILSSLADATERNVIEGKTFRALSDSEREEIADSISVMGRSSPNDKLLLVQALRRKGHVVAVTGDGTNDAPALHEADIGLAMGIAGTEVAKESSDIIILDDNFASVVKVVRWGRSVYANIQKFIQFQLTVNVAALVINVVAAVSSGEVPLNAVQLLWVNLIMDTLGALALATEPPTDHLMDRTPVGRREPLITNIMWRNLLIQAMYQVSVLLVLNFQGVRILGLEHQKSEHAIKVKNTLIFNAFVICQVFNEFNARKPDEFNIFKGVTRNFLFMGIVAFTVVLQVIIVEFLGKFTKTTRLNWQQWLISVVIGFIGWPLAVVGKLIPVPATPINNVFSKIRRTKKSKEPVASQ* 892
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g3249 891 Gene3D - 294 647 IPR023214 -
Psa1g3249 891 SUPERFAMILY Calcium ATPase, transmembrane domain M 3 866 IPR023298 -
Psa1g3249 891 SUPERFAMILY Calcium ATPase, transduction domain A 75 170 IPR008250 -
Psa1g3249 891 Gene3D - 3 173 - -
Psa1g3249 891 PRINTS H+-transporting ATPase (proton pump) signature 448 466 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Psa1g3249 891 PRINTS H+-transporting ATPase (proton pump) signature 602 618 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Psa1g3249 891 PRINTS H+-transporting ATPase (proton pump) signature 634 659 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Psa1g3249 891 PRINTS P-type cation-transporting ATPase superfamily signature 121 135 - -
Psa1g3249 891 PRINTS P-type cation-transporting ATPase superfamily signature 297 311 - -
Psa1g3249 891 PRINTS P-type cation-transporting ATPase superfamily signature 495 506 - -
Psa1g3249 891 PRINTS P-type cation-transporting ATPase superfamily signature 517 527 - -
Psa1g3249 891 PRINTS P-type cation-transporting ATPase superfamily signature 602 621 - -
Psa1g3249 891 PRINTS P-type cation-transporting ATPase superfamily signature 626 638 - -
Psa1g3249 891 SFLD Haloacid Dehalogenase 279 654 - -
Psa1g3249 891 TIGRFAM ATPase-IIB_Ca: calcium-translocating P-type ATPase, PMCA-type 2 866 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
Psa1g3249 891 ProSitePatterns E1-E2 ATPases phosphorylation site. 299 305 IPR018303 -
Psa1g3249 891 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 304 499 IPR023299 GO:0000166
Psa1g3249 891 Pfam Cation transporting ATPase, C-terminus 687 863 IPR006068 -
Psa1g3249 891 SFLD p-type atpase 279 654 IPR044492 -
Psa1g3249 891 PANTHER CATION TRANSPORTING ATPASE 2 880 - -
Psa1g3249 891 CDD P-type_ATPase_Ca_PMCA-like 2 735 - -
Psa1g3249 891 Pfam haloacid dehalogenase-like hydrolase 294 616 - -
Psa1g3249 891 Gene3D - 307 502 IPR023299 GO:0000166
Psa1g3249 891 Pfam E1-E2 ATPase 75 275 - -
Psa1g3249 891 Gene3D - 5 853 - -
Psa1g3249 891 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 568 682 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Psa1g3249 891 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 237 320 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Psa1g3249 891 PANTHER CALCIUM-TRANSPORTING ATPASE 2 880 - -
Psa1g3249 891 SUPERFAMILY HAD-like 295 707 IPR036412 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g3249 Psa-Chr1 285505606 285518627 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g3249 2 885 Primary Pumps ATPases AT5G57110 77.540 0.0 1401
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g3249 K01537 - gmx:100792945 1522.29
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa1g3249 1 285505606 285518627 Psa1g3249 1 285505606 285518627 ECH