Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g3246 ATGGCCAAAGAGGAAGTGAAAACCGTGGTTCCTGAATCTGTTTTGAAGAAGCAGAAAAGGAACGAGGAATGGGCTTTGGTGAAGAAGCAGGAACAGGAATCAGCCAAGAAGAAGAGATCTGAAACCAGGAAACTCATTTGGAGCAGAGCTAAGCAATACGCTAAGGAATACGATGACCAGCAAAAGGAGTTGATTAGCTTGAAGCGTGAAGCCAAGCTTAAGGGTGGGTTTTATGTTGACCCTGAAGCTAAGCTCTTGTTCATTGTCAGGATCAGAGGTATCAATGCCATGGACCCAAAATCAAGGAAGATTTTACAGCTTTTGCGTTTGAGACAGGTCTTTAATGGCGTCTTTCTCAAAGTTAACAAAGCCACCGTTAACATGCTCCACAGGGTAGAGCCTTATGTTACATATGGGTATCCTAATCTGAAGAGTGTCAGGGAATTGATCTACAAGAGGGGCTATGGAAAGGTTGACAGGCAGAGAATTGCTTTGACTGACAACTCTATCATCGAACAGGTCCTTGGGAAGCATGGCATCATTTGCATTGAAGATCTGATTCACGAGATCTTGACTGTTGGACCTCACTTCAGAGAGGCAAACAACTTCCTATGGCCTTTCAAGCTCAAAGCTCCCTTGGGAGGCATGAAGAAGAAAAGAAATCATTACGTTGAGGGTGGTGATGCCGGCAACAGGGAAGAGTACATCAATGAACTCATTAGAAGGATGAATTAG 735 0.4408 MAKEEVKTVVPESVLKKQKRNEEWALVKKQEQESAKKKRSETRKLIWSRAKQYAKEYDDQQKELISLKREAKLKGGFYVDPEAKLLFIVRIRGINAMDPKSRKILQLLRLRQVFNGVFLKVNKATVNMLHRVEPYVTYGYPNLKSVRELIYKRGYGKVDRQRIALTDNSIIEQVLGKHGIICIEDLIHEILTVGPHFREANNFLWPFKLKAPLGGMKKKRNHYVEGGDAGNREEYINELIRRMN* 245
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Psa1g3246 244 Pfam Ribosomal protein L30p/L7e 86 136 IPR016082 -
Psa1g3246 244 ProSitePatterns Ribosomal protein L30 signature. 104 136 IPR018038 -
Psa1g3246 244 Gene3D - 85 190 IPR036919 -
Psa1g3246 244 Gene3D - 191 244 IPR036919 -
Psa1g3246 244 TIGRFAM uL30_euk: 60S ribosomal protein uL30 11 244 IPR005998 GO:0000463|GO:0003735|GO:0022625
Psa1g3246 244 PANTHER 60S RIBOSOMAL PROTEIN L7-RELATED 6 244 - -
Psa1g3246 244 PANTHER 60S RIBOSOMAL PROTEIN L7 6 244 IPR039699 -
Psa1g3246 244 CDD Ribosomal_L7_archeal_euk 85 244 IPR035808 -
Psa1g3246 244 Pfam Ribosomal L30 N-terminal domain 10 81 IPR012988 -
Psa1g3246 244 Coils Coil 50 70 - -
Psa1g3246 244 SUPERFAMILY Ribosomal protein L30p/L7e 85 244 IPR036919 -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Psa1g3246 Psa-Chr1 285357623 285360599 Dispersed
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g3246 1 244 Cytoplasmic Ribosomal Protein Gene Family AT3G13580 81.557 1.52e-153 425
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g3246 K02937 - jre:109006184 439.884