Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g3233 ATGAATGATGATGAAAATCACAAAGCATGCACGTTAGATCTTAATCTTGAACTTGGATTAGGATTTCATGTGCAAAAGAATGTGGACAAATCATTGGTTAATTCAAAAAATGATTTGAATCATAATAAAGCTTATGAGTTGAGTTTGAAGAGAAGCTATGTTGAAGAAGAAGTTGAAGAAGAAGATGAAGAAATTGCTATTAACACCACCATTGACAGGAACGGGTGCACAAAGAAATTGAGGCTTACAAAGGAGCAATCTACCATGCTTGAAGATGCTTTCAAGCTTCATAACACCATCAACACTGCTCAAAAACGGGCACTTGCTGAGAAATTGAATTTAAAGCAAAGACAGGTTGAAGTTTGGTTTCAGAACAGAAGGGCAAG 386 0.3601 MNDDENHKACTLDLNLELGLGFHVQKNVDKSLVNSKNDLNHNKAYELSLKRSYVEEEVEEEDEEIAINTTIDRNGCTKKLRLTKEQSTMLEDAFKLHNTINTAQKRALAEKLNLKQRQVEVWFQNRRA 128
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g3233 128 CDD homeodomain 78 128 IPR001356 GO:0003677
Psa1g3233 128 SMART HOX_1 75 128 IPR001356 GO:0003677
Psa1g3233 128 Pfam Homeodomain 79 128 IPR001356 GO:0003677
Psa1g3233 128 ProSiteProfiles 'Homeobox' domain profile. 73 128 IPR001356 GO:0003677
Psa1g3233 128 SUPERFAMILY Homeodomain-like 69 128 IPR009057 -
Psa1g3233 128 Gene3D - 82 128 - -
Psa1g3233 128 PANTHER - 11 128 - -
Psa1g3233 128 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT9-LIKE 11 128 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g3233 Psa-Chr1 284409534 284410064 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g3233 44 128 Homeobox Transcription Factor Family AT5G06710 52.326 1.49e-21 85.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Psa1g3233 Homeodomain 5e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g3233 K09338 - lang:109339930 102.064