Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g3219 ATGGTGAAGATAGGTTTTGGTACCTTTGATGACTCTTTTAGCATTGCCTCACTTAAGGCTTATTTATCAGAGTTCATTGCCACTTTGATTTTTGTCTTTGCTGGAGTTGGATCAGCCATTGCTTACAATGAATTAACATCAGATGCAGCCTTGGATCCAGCTGGTCTAGTGGCAGTAGCTGTGGCTCATGCATTTGCACTATTTGTTGGTGTGTCCATAGCAGCCAACATCTCAGGTGGACATTTGAACCCGGCTGTCACTTTTGGTTTAGCTATTGGTGGCAACATCACCATCCTAACTGGTTTCTTCTATTGGATCGCCCAATTACTTGGCTCCATCGTCGCATCTCTCCTCCTCAACTATGTCACCGCTAAGAGTGTTCCAACTCATGGTGTTGCTGCTGGATTGAACCCTATTGCAGGATTAGTCTTTGAGATTATAATAACATTTGGGTTGGTTTACACCGTTTATGCCACAGCAGCTGACCCCAAAAAGGGTTCATTAGGAACCATTGCACCAATCGCCATTGGGTTTGTTGTGGGTGCCAACATCTTAGTGGCCGGTCCATTCAGCGGCGGGTCAATGAACCCGGCTCGCTCATTCGGTCCAGCTGTGGTTAATGGAAACTTTGCTGATAATTGGATTTACTGGGCTGGTCCATTGATATTAGTGGCCGGTCCATTCAGCGGCGGGTCAATGAACCCGGCTCGCTCATTCGGTCCAGCTGTGGTTAATGGAAACTTTGCTGATAATTGGATTTACTGGGCTGGTCCATTGATAGGAGGAGGCTTGGCTGGGTTGATTTATGGTGACATCTTTATTGGTTCATATGCTCCGGCGCCAGTAACCGAAACATACCCTTAA 864 0.4653 MVKIGFGTFDDSFSIASLKAYLSEFIATLIFVFAGVGSAIAYNELTSDAALDPAGLVAVAVAHAFALFVGVSIAANISGGHLNPAVTFGLAIGGNITILTGFFYWIAQLLGSIVASLLLNYVTAKSVPTHGVAAGLNPIAGLVFEIIITFGLVYTVYATAADPKKGSLGTIAPIAIGFVVGANILVAGPFSGGSMNPARSFGPAVVNGNFADNWIYWAGPLILVAGPFSGGSMNPARSFGPAVVNGNFADNWIYWAGPLIGGGLAGLIYGDIFIGSYAPAPVTETYP* 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g3219 287 Pfam Major intrinsic protein 14 222 IPR000425 GO:0015267|GO:0016020|GO:0055085
Psa1g3219 287 Gene3D Glycerol uptake facilitator protein. 223 278 IPR023271 -
Psa1g3219 287 Gene3D Glycerol uptake facilitator protein. 2 222 IPR023271 -
Psa1g3219 287 PRINTS Major intrinsic protein family signature 19 38 IPR000425 GO:0015267|GO:0016020|GO:0055085
Psa1g3219 287 PRINTS Major intrinsic protein family signature 63 87 IPR000425 GO:0015267|GO:0016020|GO:0055085
Psa1g3219 287 PRINTS Major intrinsic protein family signature 100 119 IPR000425 GO:0015267|GO:0016020|GO:0055085
Psa1g3219 287 PRINTS Major intrinsic protein family signature 144 162 IPR000425 GO:0015267|GO:0016020|GO:0055085
Psa1g3219 287 PRINTS Major intrinsic protein family signature 177 199 IPR000425 GO:0015267|GO:0016020|GO:0055085
Psa1g3219 287 PRINTS Major intrinsic protein family signature 214 234 IPR000425 GO:0015267|GO:0016020|GO:0055085
Psa1g3219 287 PANTHER AQUAPORIN TIP2-2-RELATED 1 222 - -
Psa1g3219 287 PANTHER AQUAPORIN TIP2-2-RELATED 222 287 - -
Psa1g3219 287 PANTHER AQUAPORIN-8 1 222 IPR034294 -
Psa1g3219 287 PANTHER AQUAPORIN-8 222 287 IPR034294 -
Psa1g3219 287 SUPERFAMILY Aquaporin-like 15 222 IPR023271 -
Psa1g3219 287 ProSitePatterns MIP family signature. 81 89 IPR022357 -
Psa1g3219 287 SUPERFAMILY Aquaporin-like 222 275 IPR023271 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g3219 Psa-Chr1 283007601 283008860 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g3219 1 284 Major Intrinsic Protein MIP AT5G47450 68.421 1.10e-127 362
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g3219 K09873 - fve:101300912 405.216