Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g3214 ATGTCCATGACACCAACTTATCCTTATTCACTATCTTCTCCTCCTATGCCTTTTGATCTTAATAACAATGAAGATCACAATCATCATCTCTTCGATACAAATATTCATCAACCCTCTTCTTCATCTTCTTCTCTATCATATTCCACACTTTTCAACCAAAATCAAAATCAAGGAGACTCTTATTCTTATGAACCAAATCACTTACAAAGTGATGTAGAGGTTGTGAAGTTTGTCCCTTCTAGTGGATCACGTGATCATCAAGAAGTAAAGAAAGAAAATGAGAATGCAGAATTTGAAGCCGAGGATAGTAGTTCAATGAAGTGGATGCCATCAAAGAAGAGAATAGTTAAGAGAATGATGGAAGATCAAAGAGTTTCTGAGCACAAATTTGAAAAAGAAAAGCTATTACCACATGAAGGAACTGATTATAGTAGCAACAACAATTGCTCAAACAACAACAATATGATTGTTAGGGTTTGTAGTGATTGCCACACAACTAAGACCCCTCTATGGAGAGGTGGACCAGCAGGTCCTAAGTCTCTCTGCAATGCCTGCGGGATTCGACAAAGGAAAGCACGGCGCGCCCTCGCAGCAGCTGCGTCTGCAAATGGTGAGATTCATGTGGCTGCTGAGAAACCCTATGTGAAAGGAAAGAAGTTGAAAACCAAAAGGAAAAGGTCAAAAACTGATGAATGTGCACCACCACAGTTGAAGAGGAAGGGTAAAATTGGAAACAAAAGTACTAGTTTTGAAGATTTGATAACAAGTTTGAGTAACAACTTTGCTTCTCATCAAGTTTTTCCTCAAGATGAGAAAGAGGCTGCTATTCTACTCATGGCTTTGTCTTCTGGTTTACTTCATGAATTTGATTCCTCCTAA 879 0.3868 MSMTPTYPYSLSSPPMPFDLNNNEDHNHHLFDTNIHQPSSSSSSLSYSTLFNQNQNQGDSYSYEPNHLQSDVEVVKFVPSSGSRDHQEVKKENENAEFEAEDSSSMKWMPSKKRIVKRMMEDQRVSEHKFEKEKLLPHEGTDYSSNNNCSNNNNMIVRVCSDCHTTKTPLWRGGPAGPKSLCNACGIRQRKARRALAAAASANGEIHVAAEKPYVKGKKLKTKRKRSKTDECAPPQLKRKGKIGNKSTSFEDLITSLSNNFASHQVFPQDEKEAAILLMALSSGLLHEFDSS* 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g3214 292 ProSitePatterns GATA-type zinc finger domain. 160 185 IPR000679 GO:0006355|GO:0043565
Psa1g3214 292 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 156 193 - -
Psa1g3214 292 MobiDBLite consensus disorder prediction 83 101 - -
Psa1g3214 292 PANTHER GATA TRANSCRIPTION FACTOR 21-LIKE 3 287 - -
Psa1g3214 292 CDD ZnF_GATA 159 187 IPR000679 GO:0006355|GO:0043565
Psa1g3214 292 Gene3D - 156 242 IPR013088 GO:0006355|GO:0008270
Psa1g3214 292 Pfam GATA zinc finger 160 193 IPR000679 GO:0006355|GO:0043565
Psa1g3214 292 ProSiteProfiles GATA-type zinc finger domain profile. 158 190 IPR000679 GO:0006355|GO:0043565
Psa1g3214 292 MobiDBLite consensus disorder prediction 79 105 - -
Psa1g3214 292 SMART GATA_3 154 206 IPR000679 GO:0006355|GO:0043565
Psa1g3214 292 MobiDBLite consensus disorder prediction 221 241 - -
Psa1g3214 292 PANTHER GATA TRANSCRIPTION FACTOR 22-RELATED 3 287 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g3214 Psa-Chr1 282726247 282727309 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g3214 103 287 C2C2-Gata Transcription Factor Family AT4G26150 40.553 1.39e-31 118
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Psa1g3214 GATA 1.4e-16 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g3214 - - gmx:100780875 233.417
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa1g3214 1 282726247 282727309 Psa1g3214 1 282726247 282727309 ECH
Psa4g0341 4 20764751 20766451 Psa1g3214 1 282726247 282727309 PCT