Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g3178 ATGGAAGGTGTATTTTCCCTTCCTGTAGCCGTCAGAACTGAATTTATCCATTCTCTCATGCAATCTCTAGGAGGATGCTCTTACATTTGTCTGTGGACATATGATACCATATTACAAAATCGTTTGTCCTTCTTGGATGGTATCTACAATGTGATAAGCAACCACCAACCAAGTTCTTCGTTGGGAAGTCTCGCACAACAGCTTTTCGATCAGTACACGATTTTATCATTCGATATCAATGAAGACCGTATTCCTGGACTCGCTTTTAGGAACCAACGCCGTTATCTAGAGCTGCAACAGGTGGAACTTCTGGCACTGTCATCAACAGAAATACAGACACAATTCTACAAGGAAGCAAGGATTAAGACTGCTGTTTTCATGGGATGCAACAAAGGAGAAATTGAGCTTGGTTTCTTAAATATGTCCAAAACTGATATTCAAACAGCATTTAGGAGTTTATTTCCTGAAGATTTTTCAAGACAAATTCAACAAATTGATCAAAATAATAATAATAATAATCCACCTTCATCATCTTCATCTTCAATGAGATCACTATCAACAGCAGGTAGTCCTGAATACTCATCTCTCATGTTCAACACAAATCCACCTGGAACTTCTCCATCATCACATCACTTTCCTGATCATATCCTTGGAGGAGTAAATATTCCTCCAATGAGACCTGTTTCGAACACACTACCCTTTCATCTTCAACAACTACCTCAAATCACGCCAACACAGTTATTCCCTATTGATCAACAGAATGATGCAATAATGAGAGCAATCCAGAATGTTCTATCTACACCCCCTTCTCAGCAAAGTTACGCGGCACATCCCGGAGCTAGTGCATTTGGAAGGTATAGAAACGATAAAAGTCCTATTATCATAGGGTCGAATTTTAGACGACAGAGTTTGATGAAGAGATCGTTTGCATTCTTTAGAAGCTTGAATTTGATGAGACTGAGAGAACGAAATCAAGCGATGCGTCCTTCTAGTAATCAACTTCATCATATGATATCGGAGCGAAGACGACGCGAGAAGCTTAACGATAACTTCCAAACACTTAGGGCATTACTTCCTCAAGGAACTAAGAAAGACAAAGCATCCATACTGATAACAGCGAAAGAGACCTTAAGATCAATGATGGAAGAAATAGAGAAACTAAGCAAAAGAAACCAAGAGTTGATGTCACAAAAGTTGGCTGCTTCGAATAAAGAAACTATGAAATTCTCGTCGAATGAAAGAATAAACGTGCGAGTTTTGCATGTACCGGAATCAAGTTCATCGGAAGATGAACCAATGATAGTGGAGTTACAAGTGAACGCGATAGGACAAGTTTCTCAAGTTGATATGTTGATTCGATTATTAGAATTCTTAAATCAAGTTCATCATGTCAATTTGATTTCAATGGATGCAACAAATGCAAATACTTCACAAGGGAATAATCATCATCATCAAATAACATTCAGGCTAAGAATTACTCAGGTGAGTGAATGGGACGAAGAGGCTTTCCAAGAAGCAGTGAGAAGAGTAGTTGCTGACTTGATACAGTACCAAGTGGACCAAAATCTATGA 1572 0.3861 MEGVFSLPVAVRTEFIHSLMQSLGGCSYICLWTYDTILQNRLSFLDGIYNVISNHQPSSSLGSLAQQLFDQYTILSFDINEDRIPGLAFRNQRRYLELQQVELLALSSTEIQTQFYKEARIKTAVFMGCNKGEIELGFLNMSKTDIQTAFRSLFPEDFSRQIQQIDQNNNNNNPPSSSSSSMRSLSTAGSPEYSSLMFNTNPPGTSPSSHHFPDHILGGVNIPPMRPVSNTLPFHLQQLPQITPTQLFPIDQQNDAIMRAIQNVLSTPPSQQSYAAHPGASAFGRYRNDKSPIIIGSNFRRQSLMKRSFAFFRSLNLMRLRERNQAMRPSSNQLHHMISERRRREKLNDNFQTLRALLPQGTKKDKASILITAKETLRSMMEEIEKLSKRNQELMSQKLAASNKETMKFSSNERINVRVLHVPESSSSEDEPMIVELQVNAIGQVSQVDMLIRLLEFLNQVHHVNLISMDATNANTSQGNNHHHQITFRLRITQVSEWDEEAFQEAVRRVVADLIQYQVDQNL* 524
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g3178 523 Pfam Helix-loop-helix DNA-binding domain 335 380 IPR011598 GO:0046983
Psa1g3178 523 SMART finulus 337 386 IPR011598 GO:0046983
Psa1g3178 523 PANTHER TRANSCRIPTION FACTOR BHLH041-RELATED 1 514 - -
Psa1g3178 523 Coils Coil 370 404 - -
Psa1g3178 523 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 331 380 IPR011598 GO:0046983
Psa1g3178 523 Gene3D - 329 405 IPR036638 GO:0046983
Psa1g3178 523 PANTHER TRANSCRIPTION FACTOR BHLH041-RELATED-RELATED 1 514 IPR044658 -
Psa1g3178 523 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 329 397 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g3178 Psa-Chr1 279353898 279357396 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g3178 11 514 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G56960 38.961 1.20e-85 272
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Psa1g3178 HLH 5.5e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g3178 - - gmx:100807098 573.163
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa1g3178 1 279353898 279357396 Psa1g3178 1 279353898 279357396 ECH