Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g3163 ATGGCCGCTGCTGTCAACCACCACCACCACCACCTCCTCCTCCTCCTTTTCTCTCTCTCCTTACTTTCTCTCTCCACCGCACAACTACCACCCTCAGAAACTCAATCCCTCCTCAAACTAAAACAATCCTTCACAAACTCCGACAAAAACTTAGCCTCATGGATCCCAAACGTCTCTCCATGTTCCGGCACATGGTCTGGTGTTATCTGCTTCAACAATGTGATCACCGGTCTCCATCTCTCCGACCTTGGCCTCTCCGGAACTATAGACATCAACGCTCTCGCAGAGATTCGTGGCCTCAGAACACTCAGTTTCGTCAACAACTCATTCTCCGGCCCAATGCCGGAGTTCAGCAAACTCGGCACCATCAAGTCTCTTCTCCTCGCGCAAAACCAATTCTCCGGCCCTATTCCGCCGGATTTTTTCTCTCATTTAGCCTCCTTGAAAAAAATCTGGCTCACCAATAACAAATTCACCGGCAACATTCCGGGTTCTTTAACCCAACTCGTCCTCCTCAAAGAGCTTCACCTCGAAGGAAACCAGTTCTCCGGCCAGTTACCGAATCTCAAACAAGATATCAAATCATTCGACGTTTCGAATAACAAGTTAGAAGGTCCTATTCCTGAAGGCCTGTCCAAATTCAGTGCAGCTTCGTTTTCCGGAAATGAAGGTCTCTGTGGAAAACCTTTGGAAAAACAATGTGAAGCTTTGGCTTCCTCCGACGAGTATTCGCTACCAGATAGCCCACCAGAAAACGCTTCTGAATCCGATTTGGTGTTTAAAGTGATAATGATTCTGATAGTGGCAGTTATAGCAGCGGTTATATTTATGTTTCTGAAATCTCGACAACGAAGACGCGACGAAGATTTCAGCGTCGTGAGCGGAGACTCCCGCCGAGGCTCCAGCACCGAAGACGTTATGCAAGTGCACGTGCCGATAAGCCGATCTTCGTCCGCATCAGAGAGAGTCGGGAGAAGGAACGTGGGAGAGTCGGCGAAAAGAGGAGGAATGGCGGGTGGGAATAGAATTGGGCTAGGTGATCTTGTAATGGTGAATGATGAGAAGGGTTCATTTGGTTTACAGGATCTGATGAAAGCTGCTGCTGAGGTATTGGGGAACGGCGGATTGGGATCGGCTTATAAAGCTGCAATGGCGAACGGGTTGAGCGTGGTTGTGAAAAGGGTGAGGGAGATGAATAAAATCGGTAAAGACGTGTTCGATGCTGAGATGAGACAGTTTGGGAGGATTCGACATGCTAATATTTTGACTCCTTTGGCTTATCATTATAGGCGCGAAGAAAAGCTTTTCGTTACCGAGTATATGCCTAAAGGAAGCTTGTTATACGTCTTGCATGGTGACAGAGGATCATCTCATGCCGACTTAACTTGGCCTATCCGATTAAAGATCGCTAAAGGAATTGCGAGAGGTTTAAGCTTCCTTTACTCCGAGTTTTGCACCTACGATTTGCCTCATGGAAACCTGAAATCAAGCAATGTTCTAATATCTGATGAATATGAGCCTCTGTTAAGTGATTATGCTTTTCAACCACTAATCAACCCAAGCATTGCAGTGCAATCAATGTTTGCGTACAAAACACCCGATTACGTTCAAAACCAGAAGCTTTCGCAGAAAGCTGATGTTTATTGCCTTGGAATCATCCTTCTTGAACTCATAACAGGGAAATTCCCTTCTCAGTATCATAGTAATGGTAAAGGCGGTACGGACGTTGTTCAATGGGTTCTCACGGCGATTTCTGACAGACGAGAAGCTGAATTGATTGATCCTGAGTTACAAAAGAATGCATCAAATTCAATGAATAATATGCTCCAACTTCTCTTAATTGGAGCTGCTTGTACCGAAAGTAACCCTGAACAAAGAGTACATATGAAAGAAGCTATTAGAAGGATAGAGGACATACAACTCTAA 1926 0.4559 MAAAVNHHHHHLLLLLFSLSLLSLSTAQLPPSETQSLLKLKQSFTNSDKNLASWIPNVSPCSGTWSGVICFNNVITGLHLSDLGLSGTIDINALAEIRGLRTLSFVNNSFSGPMPEFSKLGTIKSLLLAQNQFSGPIPPDFFSHLASLKKIWLTNNKFTGNIPGSLTQLVLLKELHLEGNQFSGQLPNLKQDIKSFDVSNNKLEGPIPEGLSKFSAASFSGNEGLCGKPLEKQCEALASSDEYSLPDSPPENASESDLVFKVIMILIVAVIAAVIFMFLKSRQRRRDEDFSVVSGDSRRGSSTEDVMQVHVPISRSSSASERVGRRNVGESAKRGGMAGGNRIGLGDLVMVNDEKGSFGLQDLMKAAAEVLGNGGLGSAYKAAMANGLSVVVKRVREMNKIGKDVFDAEMRQFGRIRHANILTPLAYHYRREEKLFVTEYMPKGSLLYVLHGDRGSSHADLTWPIRLKIAKGIARGLSFLYSEFCTYDLPHGNLKSSNVLISDEYEPLLSDYAFQPLINPSIAVQSMFAYKTPDYVQNQKLSQKADVYCLGIILLELITGKFPSQYHSNGKGGTDVVQWVLTAISDRREAELIDPELQKNASNSMNNMLQLLLIGAACTESNPEQRVHMKEAIRRIEDIQL* 642
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g3163 641 Gene3D Phosphorylase Kinase; domain 1 345 440 - -
Psa1g3163 641 SUPERFAMILY Protein kinase-like (PK-like) 369 636 IPR011009 -
Psa1g3163 641 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 9 641 - -
Psa1g3163 641 Gene3D Ribonuclease Inhibitor 142 235 IPR032675 -
Psa1g3163 641 Pfam Protein kinase domain 369 633 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa1g3163 641 Coils Coil 629 641 - -
Psa1g3163 641 Pfam Leucine rich repeat 123 182 IPR001611 GO:0005515
Psa1g3163 641 Gene3D Ribonuclease Inhibitor 32 141 IPR032675 -
Psa1g3163 641 SUPERFAMILY L domain-like 53 214 - -
Psa1g3163 641 ProSiteProfiles Protein kinase domain profile. 365 641 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa1g3163 641 Gene3D Transferase(Phosphotransferase) domain 1 441 641 - -
Psa1g3163 641 Pfam Leucine rich repeat N-terminal domain 31 70 IPR013210 -
Psa1g3163 641 PANTHER LRR RECEPTOR-LIKE KINASE 9 641 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g3163 Psa-Chr1 277831052 277833099 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g3163 12 641 Receptor kinase-like Gene Family AT3G42880 50.623 0.0 628
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Psa1g3163 Pkinase 3.5e-27 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g3163 - - gmx:100790660 816.994
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa4g0439 4 26761150 26763968 Psa1g3163 1 277831052 277833099 PCT