Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g3153 ATGGCTCTTTCTTCAACAAAACCAAACCCCACTCTCATCACATTCACATTCATTTTCTTAACTTTTATGTTGTTTACTACTCCATTACTATGTGCCAGTGCTCCAACAAAAACAGAAGCTGGATTTGAGTTTCTTAAGGTTGCTCCATCTGAATTTGTCGGGTCAGTGAATGATGTAGTTGATATTTTGCAACAAGTTACAAGTATTCTTTCGCAATTTGGTGGTGCTGGCTTTGGTGATTCACGTCTTTCAAATGCTGTTTCTGATTGCCTTGATTTGCTTGACCTTTCATCTGATGCACTTACTTGGTCTGTATCTGCTACTCAGACCCCCCAAGGTAAGCATAATAGTACTGGAAATTTGAGCTCTGATGTGAGAACATGGCTTAGTGCTGCACTTGCAAATCCAGAGACATGCCAGAACGGTTTTGAAGGTACAAATGGCATTGTAAGCACTTTAGTTTCCACTGGTTTAGGCCAAATGATGTCACTACTCACAGAGCTTCTCACACAAGTGAACCCTAACTTCGATAGCTTCACAACGAAGCAAACACAAAAAGGTCAATTTCCTGCATGGTTCAAACGAGAAGATAGAAAGCTCTTGATGGCGAATGGTGTCGGCATGGACGTTGTCGTTGCTAAAGACGGTAGCGGGAATTTTACGACGGTGATGGATGCAGTGCATGCAGCTCCTGATAATAGCATGAAACGGTTTGTGATTTATGTGAAGAGAGGTGTTTATGTTGAAAATGTTGAAATAAAGAAGAAGAAGTGGAATCTTATGATGGTTGGAGATGGTATGAATGCGAGTGTTATATCGGGTAATCGGAGCTTCATCGACGGGTGGACTACATTCAGATCAGCTACCTTTGCTGTGAGTGGTAGAGGATTTATAGCAAGAGACATCAGTTTTCAAAACACTGCAGGTCCTGAGAAGCACCAAGCAGTGGCATTAAGATCGGACTCCGACCTTTCCGTATTTTACCGATGCGGAATTTTCGGTTACCAAGATAGTCTTTATACTCACACCATGCGTCAATTCTATAGAGAATGCAAAATAAGCGGCACAGTTGATTTCATCTTTGGCGACGCCACGACAGTTTTTCAAAACTGTCAAATACTAGTTAAGAAAGGGTTACCAAATCAAAAGAACACCATCACAGCTCAAGGACGAAAAGATCCCAACGAACCAACCGGTTTCTCAATCCAATTCTGCAACATCACCGCTGATTCCGACCTTCTTCCCTTAGTTAACTCCACCTGGACTTATCTCGGAAGGCCGTGGAAACAATATTCGAGAACAGTTTTCATGCAATCTCATATAAGTGATGTGTTGCGGCCGGAAGGGTGGCTAGAATGGAACGGAGATTTTGCGTTGGATACATTATACTACGCGGAGTATATGAATTATGGCCTCGGAGCCGGATTGAATAAACGCGTAAAATGGCCGGGATATCATATTATAAATGATTCTAGTCATGCTAGTAACTTCACAGTGACGCAATTTCTTGAGGGGAATCTATGGTTGCCTACAACTGGTGTATCCTTTACTGCTGGACTAGGAGTTTGA 1569 0.4226 MALSSTKPNPTLITFTFIFLTFMLFTTPLLCASAPTKTEAGFEFLKVAPSEFVGSVNDVVDILQQVTSILSQFGGAGFGDSRLSNAVSDCLDLLDLSSDALTWSVSATQTPQGKHNSTGNLSSDVRTWLSAALANPETCQNGFEGTNGIVSTLVSTGLGQMMSLLTELLTQVNPNFDSFTTKQTQKGQFPAWFKREDRKLLMANGVGMDVVVAKDGSGNFTTVMDAVHAAPDNSMKRFVIYVKRGVYVENVEIKKKKWNLMMVGDGMNASVISGNRSFIDGWTTFRSATFAVSGRGFIARDISFQNTAGPEKHQAVALRSDSDLSVFYRCGIFGYQDSLYTHTMRQFYRECKISGTVDFIFGDATTVFQNCQILVKKGLPNQKNTITAQGRKDPNEPTGFSIQFCNITADSDLLPLVNSTWTYLGRPWKQYSRTVFMQSHISDVLRPEGWLEWNGDFALDTLYYAEYMNYGLGAGLNKRVKWPGYHIINDSSHASNFTVTQFLEGNLWLPTTGVSFTAGLGV* 523
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g3153 522 ProSitePatterns Pectinesterase signature 2. 353 362 IPR033131 -
Psa1g3153 522 TIGRFAM PME_inhib: pectinesterase inhibitor domain 64 151 IPR006501 GO:0004857
Psa1g3153 522 CDD PMEI-like_4 24 175 - -
Psa1g3153 522 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 65 155 IPR035513 -
Psa1g3153 522 ProSitePatterns Pectinesterase signature 1. 234 253 IPR018040 -
Psa1g3153 522 Pfam Plant invertase/pectin methylesterase inhibitor 81 153 IPR006501 GO:0004857
Psa1g3153 522 SUPERFAMILY Pectin lyase-like 206 519 IPR011050 -
Psa1g3153 522 PANTHER PECTINESTERASE/PECTINESTERASE INHIBITOR 44-RELATED 46 520 - -
Psa1g3153 522 SMART PMEI_2 48 171 IPR006501 GO:0004857
Psa1g3153 522 Pfam Pectinesterase 209 506 IPR000070 GO:0030599|GO:0042545
Psa1g3153 522 Gene3D - 207 522 IPR012334 -
Psa1g3153 522 Gene3D Invertase/pectin methylesterase inhibitor family protein 44 173 IPR035513 -
Psa1g3153 522 PANTHER PECTINESTERASE 46 520 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g3153 Psa-Chr1 277372344 277377601 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g3153 18 520 Carbohydrate Esterase AT3G43270 61.776 0.0 670
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g3153 K01051 - gmx:100777500 781.556
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa1g3153 1 277372344 277377601 Psa1g3153 1 277372344 277377601 ECH