Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g3150 ATGGCTGTTCTATTTCATCGACCATCTTCACCTGTCATTTCTATTATCACCCTCCTCCTCTTCTTTTCCACCCCATTGCTTGTGTCTGGTGATGCTCCTACTATGAGACAGAACCAGATTTTCAAGTCATCTTATACTGAATTTTTGCTGTCTCTAAAAACTGTAGAGAAAGCGTTGGATGGTCTGCAACTAGAACTTAAGAAAATCAACATTGTTGATGATCCTCGCCTCTCAAATGCCATTCTGACATGCTTGGATGTTTTTGAGTTATCTTTTGAGGAACTCAGAGGATCTTCTTTAGCCATTCAAAGTGCATCAAAAGGGAAAACTGATGACACAAGGAACCTTAGGTCAGATCTAAAGACATGGCTCAGTGCAATCCATGCCAACACAGCAACTTGTATGGATGAACTTGAAGGAAGGGGTGACACAATCAAAGCAAAAATAGCCACTGCAGTTCATAAAGTGGACTCTCTGGTGTATGATCTTCTCAGGAATGTTAACAAAGTTGACGACGCCATGCTAAATCTGTTTCCAGCTTGGGTTCATCAACATATGGTGCATATAGATGCAAAATATGTCTTTGATGCAACTGTTGCGGTTGATGGTACCGGAAACTTCACTAAGATAATGGATGCCGTGCGTGCAGCTCCACACAGTAGTTTGAAAAAACGTTACGTGATACTCATAAAAAGAGGTGTTTACTTAGAAAATGTAGTGGTAGACAAGAAGAATCTTGTTATGGTCGGAGAGGGGAGGGGTGCGACCATTATCTCCGGTAACTTTAGTAAGGTCACGCATAATTTAAGTACCTACAACACTGCAACCTTTGGTGCCGAAGCTGATGGATTCATGGCGCAGGACATTTCTTTTAGAAATACTGCTGGACCTTTAGGTGAACAAGCAGTAGCACTTAGATCCACTTCTGACCACTCGATATTTTACCGTTGCGAGATTTTCGGGTATCAAGATAGCTTATATGCACACTCCCAACGCCAATTCTATAGAGAATGCGAAATCCGTGGTACTGTTGATTTTATTTTTGGATTTGCCGCAGCTGTGTTTCAAAACTGCACGATATTGGTAAAAAAGGGATTGCCAAAACAAAAGAATGCAATAACCGCTCATGGAGGAAAATATAAACTAGATTCCTTTGGCTTCTCACTTCAGTTCTGTAATATTTCTGCTGATTTTGATCTCCTACCCTTTGTGAAATCAACCTCAACTTATTTGGGAAGACCCTGGAAAGACTATTCAACCACAATTGTTATACAATCATACATCAGCAATGTTGTGAATGAAAAAGGATGGTTAGAGTGGAATGGACCCCTGTACTTAGATACACTGTATTATGCTGAGTATAACAATTATGGAGAAGGTGCTGGCACACAAAACAGAGTGAAATGGTCTGGATACCATATTCTAAATGACTCATCCCAAGCTATTAACTTCACTGTGGCTAATTTGATTACGGGGAACGAGTGGCTACCTTCATCAGGCGTACCATTCATTCCTGGATTTGGGCAACTTGCTTAA 1536 0.4076 MAVLFHRPSSPVISIITLLLFFSTPLLVSGDAPTMRQNQIFKSSYTEFLLSLKTVEKALDGLQLELKKINIVDDPRLSNAILTCLDVFELSFEELRGSSLAIQSASKGKTDDTRNLRSDLKTWLSAIHANTATCMDELEGRGDTIKAKIATAVHKVDSLVYDLLRNVNKVDDAMLNLFPAWVHQHMVHIDAKYVFDATVAVDGTGNFTKIMDAVRAAPHSSLKKRYVILIKRGVYLENVVVDKKNLVMVGEGRGATIISGNFSKVTHNLSTYNTATFGAEADGFMAQDISFRNTAGPLGEQAVALRSTSDHSIFYRCEIFGYQDSLYAHSQRQFYRECEIRGTVDFIFGFAAAVFQNCTILVKKGLPKQKNAITAHGGKYKLDSFGFSLQFCNISADFDLLPFVKSTSTYLGRPWKDYSTTIVIQSYISNVVNEKGWLEWNGPLYLDTLYYAEYNNYGEGAGTQNRVKWSGYHILNDSSQAINFTVANLITGNEWLPSSGVPFIPGFGQLA* 512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g3150 511 Pfam Plant invertase/pectin methylesterase inhibitor 74 157 IPR006501 GO:0004857
Psa1g3150 511 Gene3D - 194 508 IPR012334 -
Psa1g3150 511 Pfam Pectinesterase 196 493 IPR000070 GO:0030599|GO:0042545
Psa1g3150 511 SUPERFAMILY Pectin lyase-like 196 506 IPR011050 -
Psa1g3150 511 Coils Coil 52 72 - -
Psa1g3150 511 Gene3D Invertase/pectin methylesterase inhibitor family protein 35 170 IPR035513 -
Psa1g3150 511 PANTHER PECTINESTERASE 178 507 - -
Psa1g3150 511 PANTHER PECTINESTERASE 42 173 - -
Psa1g3150 511 ProSitePatterns Pectinesterase signature 2. 340 349 IPR033131 -
Psa1g3150 511 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 62 159 IPR035513 -
Psa1g3150 511 CDD PMEI-like_4 13 164 - -
Psa1g3150 511 PANTHER PECTINESTERASE/PECTINESTERASE INHIBITOR 44-RELATED 42 173 - -
Psa1g3150 511 PANTHER PECTINESTERASE/PECTINESTERASE INHIBITOR 44-RELATED 178 507 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g3150 Psa-Chr1 277111962 277113944 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g3150 37 507 Carbohydrate Esterase AT3G43270 48.479 8.27e-150 437
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g3150 K01051 - gmx:100798620 503.827