Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g3136 ATGGGAAACAACGTTTGCATTCTTCATTGTGTTCCTATAAAAACCAAAAAAAGAAAGACAATAAAACAAAACCTCTCACCTCCATCATCACCTCAACAAACCCTAACCCTAGACAATTATTTTGAAACAAATGAAATTACTATTCCCACCCCACTTCCCATAGAAGGAGTCCCCTTTTATGATTGTGAAATTTGCTATGAATCAAATCCTCTAAATGACTCATTCAACATAGATGGTTGCACTCATTTCTTTTGCACAAAATGCACAATCAAATACATAGTTTCAAATCTACAACAAAACAAGGTTAACCTAACTTGTCCCGAAATAGGTTGTTCCGGAACATTGAATCCTCAATATTGCAAACCAATTTTACCTAACAATGTTATGGATTGGTGGGAGAAAGCTTTGAGTGAATCAGTGATTCCGGAAAAAAATAAATTCTATTGTCCTTTTTATGATTGTTCAGCACTCTTAATTAGTGAGGAATATCACATAGGAGGAGTGATAAGTGTATATTCTATTTGTCCTCATTGCAATAGAAGGGTTTGTGCTAAGTGTAAAACTCCTTGGCATGAAGAAATGAGTTGTGAAAAGTTTCAAGGATTGAAGAGCAGTAATGATGCTCTTATGATTGATCTTGCTGGTAGAAGAAAATGGAAAAAATGTCCAAATTGTAAAAGTTTTGTTGAAAAAACTAATGGATGCGATCATATGAAATGCAGGTGTTCTTATAAGTTTTGTTATAATTGTGGACGTGGCATTAGTTCTCCTAACTATGGTTGTAATCACACAGATTGA 798 0.3421 MGNNVCILHCVPIKTKKRKTIKQNLSPPSSPQQTLTLDNYFETNEITIPTPLPIEGVPFYDCEICYESNPLNDSFNIDGCTHFFCTKCTIKYIVSNLQQNKVNLTCPEIGCSGTLNPQYCKPILPNNVMDWWEKALSESVIPEKNKFYCPFYDCSALLISEEYHIGGVISVYSICPHCNRRVCAKCKTPWHEEMSCEKFQGLKSSNDALMIDLAGRRKWKKCPNCKSFVEKTNGCDHMKCRCSYKFCYNCGRGISSPNYGCNHTD* 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g3136 265 SMART ibrneu5 197 261 IPR002867 -
Psa1g3136 265 SMART ibrneu5 130 196 IPR002867 -
Psa1g3136 265 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 11 256 IPR031127 GO:0004842|GO:0016567
Psa1g3136 265 SUPERFAMILY RING/U-box 136 200 - -
Psa1g3136 265 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 59 145 IPR013083 -
Psa1g3136 265 SUPERFAMILY RING/U-box 206 263 - -
Psa1g3136 265 Pfam IBR domain, a half RING-finger domain 216 256 IPR002867 -
Psa1g3136 265 Pfam IBR domain, a half RING-finger domain 135 196 IPR002867 -
Psa1g3136 265 ProSiteProfiles TRIAD supradomain profile. 58 265 IPR044066 -
Psa1g3136 265 SUPERFAMILY RING/U-box 59 143 - -
Psa1g3136 265 ProSiteProfiles Zinc finger RING-type profile. 62 107 IPR001841 -
Psa1g3136 265 Gene3D - 194 265 - -
Psa1g3136 265 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 11 256 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g3136 Psa-Chr1 275244433 275246332 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g3136 55 251 C3H Transcription Factor Family AT2G19610 31.401 1.55e-25 102
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g3136 K11975 - pvy:116125926 243.817