Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g3133 ATGGCACCGGAAGCAACAACAAGGAGAAGAAGGAATCGAGTTTCACCTTCCACACCAGAGATAATCGACCTCGCCTCTTACCGCTCATACGGCAAGCGAACCATCTCCGTCGTCATCAACCTTTCCGATGACGAAGAAGACATTAAGGTCCTCGATATCATTCCAAAGAACACTCTAAGAAAACGTAAACCTAAGAGAATTTTCGAAAGAGGAGAGACTTCAAATTCAAGTAACACGCCATTTGTTTGCGAAATTTGCACGGAAACTAAAACTATGAAGGAAGCTTTCTACATCAGCGGCTGCTCTCACGCGTATTGTTCTGATTGCGTTGCAAATTACATCAGTTCCAATCTTGACGATAACATCGTCAACATCTCATGTCCAGTTCCTGAATGCAAAGGTTCTTTGGTAGCGCAGTTTTGCCGGACTATTCTTCCGGTAGAGGTTTTTGAAAAGTGGAGTAAAGCATTGTGCGAGGCTTTGATAGATGTTTCGCAGAAATTCTATTGTCCCTTTGCAGACTGTTCTGCTCCTTTGATCAATGACGAAACGGAGGCGGTTAGAAATTCAGAATGCCCTAATTGTAATAGGATGTTCTGTGCACAATGTAAGGTTCCTTGGCACGATGGGATCGAATGCAGCGAGTTCCAGAAGCTGAACGCGGGGGAGAGGGAGAAAGAAGATATTATGCTGATGCGCCTTGCACAGAATATGCACTGGAAGCGATGCCCTAATTGCAAATTTTATGTTGCCAGAACACTGGGCTGCGATGCCATGAAATGCAGGTGTCTGTGTATCTTTTGTTACAACTGTGGAGGTGCCTACAATGCTGGCAGGTGCAATTGTTTTACCGGGAACCCTTCTATGATGGGACTCCACAACAACATACACAGGCTTTTTCTAGAAGGACTCTATCCGGGTCAACAACAAACTCCCTCCTATCCGGGGTATAGTTGA 957 0.4504 MAPEATTRRRRNRVSPSTPEIIDLASYRSYGKRTISVVINLSDDEEDIKVLDIIPKNTLRKRKPKRIFERGETSNSSNTPFVCEICTETKTMKEAFYISGCSHAYCSDCVANYISSNLDDNIVNISCPVPECKGSLVAQFCRTILPVEVFEKWSKALCEALIDVSQKFYCPFADCSAPLINDETEAVRNSECPNCNRMFCAQCKVPWHDGIECSEFQKLNAGEREKEDIMLMRLAQNMHWKRCPNCKFYVARTLGCDAMKCRCLCIFCYNCGGAYNAGRCNCFTGNPSMMGLHNNIHRLFLEGLYPGQQQTPSYPGYS* 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g3133 318 SUPERFAMILY RING/U-box 78 163 - -
Psa1g3133 318 SMART ibrneu5 151 213 IPR002867 -
Psa1g3133 318 SMART ibrneu5 223 282 IPR002867 -
Psa1g3133 318 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 76 165 IPR013083 -
Psa1g3133 318 Gene3D - 215 295 - -
Psa1g3133 318 SUPERFAMILY RING/U-box 224 282 - -
Psa1g3133 318 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 37 280 - -
Psa1g3133 318 ProSitePatterns Zinc finger RING-type signature. 101 110 IPR017907 -
Psa1g3133 318 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 37 280 IPR031127 GO:0004842|GO:0016567
Psa1g3133 318 SUPERFAMILY RING/U-box 155 218 - -
Psa1g3133 318 Gene3D - 168 214 - -
Psa1g3133 318 Pfam Zinc finger, C3HC4 type (RING finger) 83 128 IPR018957 GO:0046872
Psa1g3133 318 Pfam IBR domain, a half RING-finger domain 152 213 IPR002867 -
Psa1g3133 318 ProSiteProfiles Zinc finger RING-type profile. 83 131 IPR001841 -
Psa1g3133 318 ProSiteProfiles TRIAD supradomain profile. 79 289 IPR044066 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g3133 Psa-Chr1 274958174 274959465 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g3133 83 273 C3H Transcription Factor Family AT2G19610 30.348 5.15e-21 90.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g3133 K11975 - gmx:100803898 315.079