Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Psa1g3131 | ATGAAAACGACAACCACCACCACCACAACTGGTGTCGTTCCCCCATCAACGACAGAAGTAATCGACGTCGAATCATTTCATCTCCCTCCGACCACCACCAAAACCTCCACCCCCGTCGTCATCGACCTTTCCGACGGAGAAGACGACGATGAAGTAAGGATACTCAATTTCGTTCCGAAAATCAATCCTTTTCGAAAACGACAAAGGATCAACGTCGAAAAAGGCGAGTCTTCGTCTGCTAATGCTAATAAAAACGTCGTGCCGTTTATCTGCGAAATCTGCACGGAAACAAAAACTGCGAACGACGCTTTCTTCATCAGCGGTTGTTCTCATGCGTACTGCTCTGATTGCGTGGCTTTGTACGTAAGTTCGAAGCTGGAGGATAATGTGATCAACGTCAGGTGTCCTGTTTCTGGTTGCAGTGGTTTGTTGGAAGCTGAGGATTGTCGTTCGATTCTTCCAGTGGAGGTTTTCGATCGGTGGGGGAAGGCGGCGTGTGAGGCGTTGTTTGATGTATCTGAGAAATTCTATTGTCCTTATGCAGATTGTTCTGCTCTTTTGATCAATGATGGGACGGAGGCTGTTCAGTTTTCGGAGTGTCCGAATTGTAGGAAGATGTTTTGTGCTCAATGTAAGGTTCCGTGGCACGATGGGATCGAATGCAGCGAGTTCCAGAAGCTGAACGCGGACGAGAGAGGGAAAGATGATGTTATGCTGATGCGGCTCGCCAAGGATATGAATTGGAGGAGATGCCCTAATTGTAGGTTCTATGTTGCGAAATCGGAAGGTTGCTTGTTCATGAAATGCAGGTGTGGAATTGCCTTCTGTTATAACTGTGGAGTTCGTAACAATAATCGTAGCAGTCATTATTGCAACAACTGTAGGCACTAA | 891 | 0.468 | MKTTTTTTTTGVVPPSTTEVIDVESFHLPPTTTKTSTPVVIDLSDGEDDDEVRILNFVPKINPFRKRQRINVEKGESSSANANKNVVPFICEICTETKTANDAFFISGCSHAYCSDCVALYVSSKLEDNVINVRCPVSGCSGLLEAEDCRSILPVEVFDRWGKAACEALFDVSEKFYCPYADCSALLINDGTEAVQFSECPNCRKMFCAQCKVPWHDGIECSEFQKLNADERGKDDVMLMRLAKDMNWRRCPNCRFYVAKSEGCLFMKCRCGIAFCYNCGVRNNNRSSHYCNNCRH* | 297 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Psa1g3131 | 296 | PANTHER | RBR-TYPE E3 UBIQUITIN TRANSFERASE | 2 | 270 | - | - | |
| Psa1g3131 | 296 | SMART | ibrneu5 | 231 | 294 | IPR002867 | - | |
| Psa1g3131 | 296 | SMART | ibrneu5 | 159 | 221 | IPR002867 | - | |
| Psa1g3131 | 296 | ProSiteProfiles | TRIAD supradomain profile. | 87 | 296 | IPR044066 | - | |
| Psa1g3131 | 296 | Gene3D | - | 218 | 296 | - | - | |
| Psa1g3131 | 296 | Pfam | IBR domain, a half RING-finger domain | 174 | 221 | IPR002867 | - | |
| Psa1g3131 | 296 | SUPERFAMILY | RING/U-box | 89 | 172 | - | - | |
| Psa1g3131 | 296 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 87 | 173 | IPR013083 | - | |
| Psa1g3131 | 296 | ProSiteProfiles | Zinc finger RING-type profile. | 91 | 137 | IPR001841 | - | |
| Psa1g3131 | 296 | SUPERFAMILY | RING/U-box | 232 | 295 | - | - | |
| Psa1g3131 | 296 | ProSitePatterns | Zinc finger RING-type signature. | 109 | 118 | IPR017907 | - | |
| Psa1g3131 | 296 | SMART | ring_2 | 91 | 138 | IPR001841 | - | |
| Psa1g3131 | 296 | SUPERFAMILY | RING/U-box | 168 | 226 | - | - | |
| Psa1g3131 | 296 | Pfam | Zinc finger, C3HC4 type (RING finger) | 91 | 136 | IPR018957 | GO:0046872 | |
| Psa1g3131 | 296 | PANTHER | RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING | 2 | 270 | IPR031127 | GO:0004842|GO:0016567 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Psa1g3131 | Psa-Chr1 | 274893428 | 274896801 | Proximal |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Psa1g3131 | 91 | 281 | C3H Transcription Factor Family | AT2G19610 | 31.343 | 5.17e-22 | 93.2 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Psa1g3131 | K11975 | - | gmx:100807821 | 353.214 |