Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g3126 ATGGCTTCCTCATCTCACAAACTATTCCTCCTTCTCTTTACAATCCTCTTCTCACTCACTTCACCTCTCCACACAACCACTTCCACAACCACAACCTTAAATCACAAACTCACTTCCTTAAAATCTCTCTGCAAAACAACACCATACCCAAACCTTTGTTTCAATACCTTAAAACTCACCATCTCAATAAACATAAACCCAAACATCATAACCTACCTCCTCCAATCCCTTCAACAAGCAATATCCGAAACCACAAAGCTCTCTAATCTTTTCCACAACATCGGACACTCGACCGCCGTCATAGAGAAACAAAGAGGATCAATTCAAGACTGCAATGAGCTTCACCAATCAACCTTAACTTCATTAAAAACATCATTAACCCGAATCCGTTCCTCCAACAAAAGAAACATAGCTGATGCTAGAATCTACCTAAGTGCAGCACTTACAAACAAAAACACATGTCTAGAAGGACTTGATTCTGCTTCTGGTAACCTTAAACCAGTTCTCGTGAATTCTGTTATCAACACATACAAACATGTGAGTAACTCCCTTTCTATGCTCTCAAATCATGTAAACCAGGCTTCAAATCAAAAGGGTCACAAGCAAAAAATGGTTTCTCCAAAATGGCTAGATTTGGATGAATATGATCGTAATGAAGCACTTGTTGTGGCTGCAGATGGAAGTGGGAACTTTAGCAGTATCAATGATGCTATAAACTTTGCTCCAAATAATAGTATGGTTAGGATAGTGATTTATGTTAAAGAAGGGATTTATGATGAAAACGTTGAAATACCAAGTTATAAAACTAACATTATCATGCTTGGTGATGGAAGTGATTCTACTGTCATCACTGGTAACAGAAGTGTTGTTGATGGATGGACCACTTTCAGATCTGCAACTTTAGCTGTATCAGGCGATGGTTTTCTTGCAAGATACATAGCATTTGAGAACAAAGCAGGTCCAGAGAAACATCAAGCAGTTGCATTAAGAGTAAATGCAGACTTTACCGCCTTTTACAAATGCGCAATTTATGGTTACCAAGACACGCTTTATGTTCATTCATTTCGTCAATTCTATAGAGAATGCGACATCTACGGTACCATAGATTTCATATTCGGTAACGCAGCAGTAGTATTACAAGAATGCAACATTGTTTCAAGAATGCCATTACCAAATCAATTCACTGTCATAACAGCACAGTCAAGAGATAATCCGGACGAAGACACTGGAATTTCGATACAAAACTGTTCGATTCTAGCCACGGACGAACTCTATTCGAACTCTAGTAGAATCAAGAGTTACCTTGGAAGGCCATGGAGGGTTTATTCTAGAACTGTTTTGATTGAGTCTTATATTGATGATTTTATTGATGATAAGGGTTGGACAAAATGGTCAAATGAACAAGGTTTGGATAGTTTGTTTTACGGGGAGTATGAGAATTATGGACCGGGTTCGAAGATTGATAATCGGGTTGAATGGTTGGGTTACCATTTGATGGGTTATAATGATGCTTATAATTTTACTGTTTCTGAGTTTATTACTGGTGATGAATGGCTTGAGTCTACTTCAGTTCCTTATGATGATGGAATTTGA 1593 0.3804 MASSSHKLFLLLFTILFSLTSPLHTTTSTTTTLNHKLTSLKSLCKTTPYPNLCFNTLKLTISININPNIITYLLQSLQQAISETTKLSNLFHNIGHSTAVIEKQRGSIQDCNELHQSTLTSLKTSLTRIRSSNKRNIADARIYLSAALTNKNTCLEGLDSASGNLKPVLVNSVINTYKHVSNSLSMLSNHVNQASNQKGHKQKMVSPKWLDLDEYDRNEALVVAADGSGNFSSINDAINFAPNNSMVRIVIYVKEGIYDENVEIPSYKTNIIMLGDGSDSTVITGNRSVVDGWTTFRSATLAVSGDGFLARYIAFENKAGPEKHQAVALRVNADFTAFYKCAIYGYQDTLYVHSFRQFYRECDIYGTIDFIFGNAAVVLQECNIVSRMPLPNQFTVITAQSRDNPDEDTGISIQNCSILATDELYSNSSRIKSYLGRPWRVYSRTVLIESYIDDFIDDKGWTKWSNEQGLDSLFYGEYENYGPGSKIDNRVEWLGYHLMGYNDAYNFTVSEFITGDEWLESTSVPYDDGI* 531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g3126 530 CDD PMEI-like_3 42 189 - -
Psa1g3126 530 Gene3D Invertase/pectin methylesterase inhibitor family protein 37 190 IPR035513 -
Psa1g3126 530 Gene3D - 216 530 IPR012334 -
Psa1g3126 530 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 40 189 IPR035513 -
Psa1g3126 530 Pfam Plant invertase/pectin methylesterase inhibitor 40 186 IPR006501 GO:0004857
Psa1g3126 530 SMART PMEI_2 35 186 IPR006501 GO:0004857
Psa1g3126 530 SUPERFAMILY Pectin lyase-like 220 527 IPR011050 -
Psa1g3126 530 PANTHER PECTINESTERASE 7 529 - -
Psa1g3126 530 TIGRFAM PME_inhib: pectinesterase inhibitor domain 12 190 IPR006501 GO:0004857
Psa1g3126 530 PANTHER PECTINESTERASE 7 529 - -
Psa1g3126 530 ProSitePatterns Pectinesterase signature 2. 364 373 IPR033131 -
Psa1g3126 530 ProSitePatterns Pectinesterase signature 1. 245 264 IPR018040 -
Psa1g3126 530 Pfam Pectinesterase 221 516 IPR000070 GO:0030599|GO:0042545
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g3126 Psa-Chr1 273681918 273684447 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g3126 32 530 Carbohydrate Esterase AT2G26440 63.198 0.0 684
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g3126 - - gmx:102665651 782.711
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa1g3126 1 273681918 273684447 Psa1g3126 1 273681918 273684447 ECH