Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g3123 ATGGATACTCCACCAAACCACACTTCCTCAAATGACCTTCTCATTACCGTAACCGTTTTCGCCGTTACCGTTACCGTTTTCGTAACGATCTACTTCATCTTCCGTTACCGCCGCAATTCCCTCCTCCGCCGTCGTTTAACTTCATCTTCGTCCTCCACAGTTTTGTCATCCGGCAATAGAATATCGCCGGAGACGGCTTCGTCTTCGTCTTCCGTAGTCGATTCTCTCCCGCTGTTTACTTTCTCTTCTATCAAACGCCGGTCATCCTCTGTTGTCTCCGGCGACTGCGCTGTTTGTTTGTCGAGGTTTGAGCAAAATGATCTCCTCCGTCTCCTTCCTATCTGCTGCCACGCATTCCACGCGGAATGTATTGACGCTTGGCTCCGGTCGAATCTCACGTGTCCGCTCTGTCGTTCAGCAGTTATCGCTTCGGAATCGGAGCTTGTGAAGATTTTCCGGCCGGCATCGTCTTCATCTGATAACAGTTTCCGTTTGGAGTTAGGAAACGTCAGCAACCGCCGTAGAGCCACCGCATCTGAGAATGACAGCGGAGAAACCGACCGGAGGTCATATTCCGTCGGCGCATTTGAGTATTTCGTCGATGAGGAAGCTGAGATTCCGTTCGGTCATACTGACCGAAGAATTGTTTCCGGTGAGAAAGATGATGCACCGGCAGTACCGGCGGGGGAAATTCCGGTGGCTTCTCAGGTGAGCTTGGTCGGTGAAGGTAACTGGCTGAAGGATTACATGGATAATCTCTCAAGTTTGACGTGGTTTCGAAATTCTGGAAGGTTCATTAATGGGAGTAGTAGAAGAAACGACGTCGTTGGAGTTCAAGATTTTGATGTTGAAGCTAATACTTTTGGGGAAGAAATCAGTGAAATGTTTAGATGGGTATCAGGGTTTTGA 909 0.4906 MDTPPNHTSSNDLLITVTVFAVTVTVFVTIYFIFRYRRNSLLRRRLTSSSSSTVLSSGNRISPETASSSSSVVDSLPLFTFSSIKRRSSSVVSGDCAVCLSRFEQNDLLRLLPICCHAFHAECIDAWLRSNLTCPLCRSAVIASESELVKIFRPASSSSDNSFRLELGNVSNRRRATASENDSGETDRRSYSVGAFEYFVDEEAEIPFGHTDRRIVSGEKDDAPAVPAGEIPVASQVSLVGEGNWLKDYMDNLSSLTWFRNSGRFINGSSRRNDVVGVQDFDVEANTFGEEISEMFRWVSGF* 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g3123 302 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 8 274 - -
Psa1g3123 302 ProSiteProfiles Zinc finger RING-type profile. 96 138 IPR001841 -
Psa1g3123 302 SMART ring_2 96 137 IPR001841 -
Psa1g3123 302 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 8 274 - -
Psa1g3123 302 SUPERFAMILY RING/U-box 72 143 - -
Psa1g3123 302 Pfam Ring finger domain 95 138 IPR001841 -
Psa1g3123 302 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 57 143 IPR013083 -
Psa1g3123 302 CDD RING-H2_PA-TM-RING 95 138 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g3123 Psa-Chr1 273305381 273307530 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g3123 71 151 C3H Transcription Factor Family AT3G18930 46.591 9.88e-21 89.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g3123 K10663 - gmx:100804962 291.582