Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g3121 ATGGCGTTCCAAGATTTCGACCTCGTGTCTGAAAGGCGGAAAACCAATGCCAAATCACACCTAAGAAAAAAAATTATGGTTGGCGTTACTTCCGCCCTTCTCATAGCATGTGTCATAGCAGCTGCAGCTTTCGTTATAGTGAGACATACGGGACTAGGACTGGACAATAATTCGAAACAAGTTCCGACTGCAGCTTCAGAAGCCACGCATGTCGATAAATATTCCAGGCTTGTGAAAATGCTATGTAGCAGTTCAGATTACAAGGCAAAATGTGAAAGCACACTTACTGAGGCATTGAAAAAAGATCCTAAGTTGACAGAACCAAAGGATCTGCTAATGGTTTCTATGGTAGTCGCCCAGAATGAAATTAATAGAGCGTTCAACGAATCTTCGAACTTGAAATTCGCTAACGAGGAAGAAAAGGGAGCTTATGATGATTGTAAAGTAATGTTTGCTTCTTCTAAAGAAGAATTGGGATTCTCAATCAATGAAGTTGGTCAAGTTGATGTTTCCAAACTAGCTTCAAAAGAAGCTGATTTGAATAACTGGCTTAGTGCTGTTTTATCTTACCAACAAACGTGCATTGATGGTTTCCCCGAAGGAGATTATAAGGAAAAATTGGAGAAGATGTTTACTGAATCAAGGCAACTTTTGAGCAATTCACTTGCTATTGTTTCACAAGTTTCTCAAATTGTTAATGTATTCCATGGTGGACTAGCTGGACTCAGATTACCTTGGGGTAAAACTGCACCAACTCCCGCTCCCGTTGCTGTTGCTGCTGCTGCTCGTGGTGCTGCTGCTCCTGCTGGTTCGCCTGGTGCTGCACCTTTTGGTGCTCCCGGTGCTTCTCCAATAGTCGATGCTCCTGCTGGTGCTCCTGCTGGTGCTCCTGGCGCTGCTCCGGTTGGTGACGTTGCTGCTCCTCCTCCATGGGCTGCACCAGTTCTTGAGTTGGTTGGATCAACTGAGAAACCTACTCCTAATGTCACCGTTGCGCAAGATGGTAGTGGAGATTTCAAAACCATCTCTGAAGCTTTGGCTGCCATACCATTAACCTATGAAGGAAGGTATGTTGTTTATGTTAAAGAAGGAGTGTATGATGAGTTGGTTACAGTAACAAAGAAAATGGTGAACCTTACCATGTATGGTGATGGAGGTTTAAAGAGTATCGTCACCGGAAACAAAAATTTCGTCGATGGAGTTAGAACTTTCCAAACTGCATCATTCGTTGTACTTGGATGTGGATTTGTTGGAAGAGACATGGGATTCAGAAACACAGCCGGTGCGATAAAGCATCAAGCCGTGGCCGCCAGGATCCAAGCAGATCAAACTGTATTCGTCAACTGCAACTTTGAGGGTTACCAAGACACACTCTATGCGCAAACTCACAGACAATTCTACCGCGACTGTGTCATTTCAGGCACAATCGATTTCATCTTCGGTGACGCGTCAGCAGTCTTCCAAAACTGCGAAATGGTCCTTAGGAAGCCGCTGGAGAACCAACAAAACATTGTGACAGCACAAGGAAGAATCGACAAACAAGAAAACACCGGATTCGTTCTACAAAAATGTGTGATCAAGGGAGAAGCTGACCTTCCTCCAACTACCAAGAACTACATTGGAAGACCATGGAAGGAATATTCAAGAACAATTATCATGGAGTCTGACATAGGTGCATTGATTCATCCTGAAGGTTGGTTACCTTGGGAAGGTGATTTTGCACTAACAACGTTGTATTATGGTGAGTATAACAACGTTGGTGCTGGTGCTAACACTGATGCTAGAGTTAAGTGGATTGGACGCAAAAATATTAATAGGGAGGAGGCTCTCACTTATACTGTGGAACCTTTCTTGCAAGGAACATGGATCAATGGTACGGGTGTCCCAGCTAATTTGGGATTGTACAATTGA 1911 0.4375 MAFQDFDLVSERRKTNAKSHLRKKIMVGVTSALLIACVIAAAAFVIVRHTGLGLDNNSKQVPTAASEATHVDKYSRLVKMLCSSSDYKAKCESTLTEALKKDPKLTEPKDLLMVSMVVAQNEINRAFNESSNLKFANEEEKGAYDDCKVMFASSKEELGFSINEVGQVDVSKLASKEADLNNWLSAVLSYQQTCIDGFPEGDYKEKLEKMFTESRQLLSNSLAIVSQVSQIVNVFHGGLAGLRLPWGKTAPTPAPVAVAAAARGAAAPAGSPGAAPFGAPGASPIVDAPAGAPAGAPGAAPVGDVAAPPPWAAPVLELVGSTEKPTPNVTVAQDGSGDFKTISEALAAIPLTYEGRYVVYVKEGVYDELVTVTKKMVNLTMYGDGGLKSIVTGNKNFVDGVRTFQTASFVVLGCGFVGRDMGFRNTAGAIKHQAVAARIQADQTVFVNCNFEGYQDTLYAQTHRQFYRDCVISGTIDFIFGDASAVFQNCEMVLRKPLENQQNIVTAQGRIDKQENTGFVLQKCVIKGEADLPPTTKNYIGRPWKEYSRTIIMESDIGALIHPEGWLPWEGDFALTTLYYGEYNNVGAGANTDARVKWIGRKNINREEALTYTVEPFLQGTWINGTGVPANLGLYN* 637
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g3121 636 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 76 228 IPR035513 -
Psa1g3121 636 Gene3D Invertase/pectin methylesterase inhibitor family protein 74 229 IPR035513 -
Psa1g3121 636 TIGRFAM PME_inhib: pectinesterase inhibitor domain 63 228 IPR006501 GO:0004857
Psa1g3121 636 Pfam Pectinesterase 328 620 IPR000070 GO:0030599|GO:0042545
Psa1g3121 636 Pfam Plant invertase/pectin methylesterase inhibitor 77 224 IPR006501 GO:0004857
Psa1g3121 636 SUPERFAMILY Pectin lyase-like 325 629 IPR011050 -
Psa1g3121 636 PANTHER PECTINESTERASE/PECTINESTERASE INHIBITOR 45-RELATED 14 634 - -
Psa1g3121 636 Gene3D - 322 634 IPR012334 -
Psa1g3121 636 CDD PMEI-like_3 81 229 - -
Psa1g3121 636 ProSitePatterns Pectinesterase signature 2. 472 481 IPR033131 -
Psa1g3121 636 PANTHER PECTINESTERASE 14 634 - -
Psa1g3121 636 SMART PMEI_2 73 224 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g3121 Psa-Chr1 273174190 273177038 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g3121 1 636 Carbohydrate Esterase AT2G26450 38.370 1.01e-148 442
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g3121 - - gmx:100807628 808.905