Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g3113 ATGATGAATGGTCCATGTATGCATTGTGGAATTGATTCAACTCCACTTTGGCGTAAAGGACCAAATGGAAAGTCGATATTGTGTAATGCTTGTGGATCACGTTTCAAGGCGAAAGGAAACCTTGAAAACTATCTCCCAAAAATTGCTCTGCAAAATCGAATATTACGCCTTAACATTGAAAAAGCTAATGATAAAGGTCTCAAGCTTTCAAATAAAACTTCAGGTGGAATCAATACCAATACTCGGGACTTTAAAATCCCTCGAAAGAAACGCTCACCTGTAAAGAAGCTGACACCAATTGAGAGGTTTCATAAAACTCTTTTGAGATTATCAAAATCGGAAAAACTATCGAATGACAATATTTTATTGACCGAGAATATGAACAACTTCATGCCTAATAATGAGATAGGCCTTGGATGCATTCTTCTCCATAAGACAAATGTTACTCCTACA 453 0.3642 MMNGPCMHCGIDSTPLWRKGPNGKSILCNACGSRFKAKGNLENYLPKIALQNRILRLNIEKANDKGLKLSNKTSGGINTNTRDFKIPRKKRSPVKKLTPIERFHKTLLRLSKSEKLSNDNILLTENMNNFMPNNEIGLGCILLHKTNVTPT 151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g3113 151 Pfam GATA zinc finger 6 39 IPR000679 GO:0006355|GO:0043565
Psa1g3113 151 PANTHER OSJNBB0038F03.10 PROTEIN 11 147 IPR044589 -
Psa1g3113 151 SMART GATA_3 2 62 IPR000679 GO:0006355|GO:0043565
Psa1g3113 151 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 4 44 - -
Psa1g3113 151 CDD ZnF_GATA 5 39 IPR000679 GO:0006355|GO:0043565
Psa1g3113 151 ProSitePatterns GATA-type zinc finger domain. 6 31 IPR000679 GO:0006355|GO:0043565
Psa1g3113 151 Gene3D - 2 73 IPR013088 GO:0006355|GO:0008270
Psa1g3113 151 ProSiteProfiles GATA-type zinc finger domain profile. 6 53 IPR000679 GO:0006355|GO:0043565
Psa1g3113 151 PANTHER GATA ZINC FINGER PROTEIN 11 147 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g3113 Psa-Chr1 272752160 272763553 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g3113 4 46 C2C2-Gata Transcription Factor Family AT5G47140 67.442 1.82e-16 73.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Psa1g3113 GATA 4.6e-14 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g3113 - - cam:101490431 127.872