Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g3108 ATGGCTGGACTTGCTGTAACATATGGTCTGAATTTAAATGCGCGGTTATCCCGTTGGGTACTTAGCTTTTGCAAACTTGAAAACAAAATAATTGAAAGAATTTATCAGTACAGCCAAATTCCTAGTGAAGCACCGACAGTTATTGAAGATTCCCGCCCTTCATCCTTATGGCCTGAAAATGGGACAATTGAAATAGTTGATTTGAAGAATATAGGAATAGTTGGACGCACCGGCAGTGGCAAATCTACATTGATTCAAGCATTGTTTCGACTGGTTGAACCTGCAGAAGGAAGTATCCACATAGACAACATCAATATTTTACACATCGGTCTTCATGACCTCCGAAGTCATCTCAGTATCATACCACAGGACCCGACCTTGTTTGAAGGGACCATTCGAGGCAATCTTGATCCTCTTGAGGAGCACTCAGATAAAGACATTTGGGAGGCACTAGATAAGTCTCAACTTGGCGAGATCATCCGCGACAAAGGACGAAAGCTTGACACACCAGTTATAGAAAGTGGAGACAATTGGAGTGTAGGACAGCGGCAACTTGCTTCTCTTGGCCGAGCTCTATTGAAGCAGTCAAAAATACTTGTACTTGATGAAGCAACAGCATCCGTCGACACTGCCACTGACAATCTTATCCAGAAGATTATTCGAACAGAGTTCAAAGCCTGCACTGTCCTCACCATTGCTCCATGA 705 0.4326 MAGLAVTYGLNLNARLSRWVLSFCKLENKIIERIYQYSQIPSEAPTVIEDSRPSSLWPENGTIEIVDLKNIGIVGRTGSGKSTLIQALFRLVEPAEGSIHIDNINILHIGLHDLRSHLSIIPQDPTLFEGTIRGNLDPLEEHSDKDIWEALDKSQLGEIIRDKGRKLDTPVIESGDNWSVGQRQLASLGRALLKQSKILVLDEATASVDTATDNLIQKIIRTEFKACTVLTIAP* 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g3108 234 PANTHER MULTIDRUG RESISTANCE PROTEIN ABC TRANSPORTER FAMILY PROTEIN 1 233 - -
Psa1g3108 234 CDD ABCC_MRP_domain2 71 233 - -
Psa1g3108 234 Gene3D - 48 234 IPR027417 -
Psa1g3108 234 SMART AAA_5 67 234 IPR003593 -
Psa1g3108 234 Pfam ABC transporter 67 206 IPR003439 GO:0005524
Psa1g3108 234 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 1 233 - -
Psa1g3108 234 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 62 233 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g3108 Psa-Chr1 272220425 272221195 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g3108 69 233 Calmodulin-binding Proteins AT2G36910 31.325 1.48e-21 91.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g3108 - - gmx:100790550 399.053