Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g3092 ATGGTTGTGGGAACCTTAATTCCTCGTCCAATAAACTCATGGGTCCAAGCTTGTAGTTCACTTACTGATGCTGAATTGACATTTAAGGAGAACAACCCACCTAAAGAGCTGCAAGGAAGCGTTGCAAAGGAATCTGGAAAAGACAGTCAAGAGAAGAAAAAGAATCACATAAAGTCACTTCTTGTTGCTGCATTTGACTGTGAACCTCTATGCATAATCCGTTTGCTACAGTCGAAATTGCGAATTGGATACGCCGAGCAAACTCTATTAGCTGCATTAGGCCATGCTGCAGTGTACTCTGAAGAACATTCTAAACCGCCTCCTGGAATTCAGTCTCTTCGCATGGTGTATGGGAACTTCCAAAGAAGTAGTTTACATATATGGGAACTTCCAAAGAAGTGTGATTTTACTCCTGGTGTTCCTGTTGGGCCTATGCTGTCAAAAGCAACCAAAGGTGTAGCAGAAATTCTAAATAAGTTTCAGGATGTAGAGTTTACATGTGAATATAAATATGATGGAGGACGTGCTCAGATACATTACTTGGAGAATGGCACAGTAGAGATTTACAGTAGAAATGCTGAACGAAACACTGGGAAGTTTCCTGACGTTGTTGCAGCAGTTTCAAGGTTAAAGAAAACAACAGTATCATCCTTTATCCTTGATTGTGAACTTGTTGCATATGATCGTGCAAAACAGAGAATCCTTCCTTTCCAGGTGCTTAGTACTCGGGCCCGCAAAAATGTCAGCGTGAGTGACATAAAGGTTGAAGTTTGCATATTTGCTTTTGATTTGTTGTACCTCAATGGCCAAGCACTTCTTCAAGAAAAACCTGAAAATCCGTAG 843 0.4093 MVVGTLIPRPINSWVQACSSLTDAELTFKENNPPKELQGSVAKESGKDSQEKKKNHIKSLLVAAFDCEPLCIIRLLQSKLRIGYAEQTLLAALGHAAVYSEEHSKPPPGIQSLRMVYGNFQRSSLHIWELPKKCDFTPGVPVGPMLSKATKGVAEILNKFQDVEFTCEYKYDGGRAQIHYLENGTVEIYSRNAERNTGKFPDVVAAVSRLKKTTVSSFILDCELVAYDRAKQRILPFQVLSTRARKNVSVSDIKVEVCIFAFDLLYLNGQALLQEKPENP* 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g3092 280 PANTHER DNA LIGASE 1 40 276 - -
Psa1g3092 280 Pfam ATP dependent DNA ligase domain 144 276 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Psa1g3092 280 Gene3D - 36 143 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Psa1g3092 280 Pfam DNA ligase N terminus 42 93 IPR012308 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Psa1g3092 280 PANTHER DNA LIGASE 1/3 FAMILY MEMBER 40 276 - -
Psa1g3092 280 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 136 274 - -
Psa1g3092 280 CDD Adenylation_DNA_ligase_I_Euk 133 275 - -
Psa1g3092 280 Gene3D DNA ligase/mRNA capping enzyme 144 279 - -
Psa1g3092 280 SUPERFAMILY ATP-dependent DNA ligase DNA-binding domain 40 112 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g3092 Psa-Chr1 270834092 270835477 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g3092 41 275 Core DNA Replication Machinery Family AT1G08130 66.932 6.57e-116 349
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g3092 K10747 - gmx:100783155 370.933