Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g3090 ATGGTGAAATCGAATGTGGAGAAACATGCGGCGGAACGAAGTGATTCATTGTTCCGAGGAGTGAGGAAGAGGAAGTGGGGAAAATATGTGTCGGAAATTAGATTACCAAACAGCCGTCAAAGAATATGGTTAGGCTCTTATGACTCCGCAGAAAAAGCGGCGCGTGCATTTGACGCGGCTATGTTCTGCTTACGTGGCAGTGGTGCCAGGTTTAATTTCCCAAATAATCCACCGGAAATTGCCGGACGAAGGTCCATGACCCATTCTGAGATTCAAGCCGCCGCCGCCCGTTTTGCCAATTCTGAGCCCTGTATTGAGTTTTCGTGTCGACCCGATAATACTCCAGATCAAACACCGTCTTCTTCGGTGGGAACACCAATCACTCCATTGTTGCCTATGGATTTGCCATCTCCTGCTCTCTCCGATGTTACTGTTCAAACGGAGAGTGACATAACGGATAACGGATTGTTTAGTGATTTGTTTTCAGACACCGGGTCGGGTTACACTATGTTTCCGGGGTTTGATGATTTTTGTGGCGAGTTTTACGTGCCGGAGTTCACAAAATTTGATTATGAACAAGAGAACATGGATGAGTTTATAATTCATGATTCCTTTTTATGGAGTTTCTAA 630 0.454 MVKSNVEKHAAERSDSLFRGVRKRKWGKYVSEIRLPNSRQRIWLGSYDSAEKAARAFDAAMFCLRGSGARFNFPNNPPEIAGRRSMTHSEIQAAAARFANSEPCIEFSCRPDNTPDQTPSSSVGTPITPLLPMDLPSPALSDVTVQTESDITDNGLFSDLFSDTGSGYTMFPGFDDFCGEFYVPEFTKFDYEQENMDEFIIHDSFLWSF* 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g3090 209 PRINTS Ethylene responsive element binding protein signature 18 29 IPR001471 GO:0003700|GO:0006355
Psa1g3090 209 PRINTS Ethylene responsive element binding protein signature 40 56 IPR001471 GO:0003700|GO:0006355
Psa1g3090 209 PANTHER TRANSCRIPTION FACTOR AP2-EREBP FAMILY-RELATED 3 209 - -
Psa1g3090 209 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 3 209 - -
Psa1g3090 209 CDD AP2 16 76 IPR001471 GO:0003700|GO:0006355
Psa1g3090 209 Gene3D AP2/ERF domain 17 75 IPR036955 GO:0003700|GO:0006355
Psa1g3090 209 ProSiteProfiles AP2/ERF domain profile. 17 74 IPR001471 GO:0003700|GO:0006355
Psa1g3090 209 SMART rav1_2 17 80 IPR001471 GO:0003700|GO:0006355
Psa1g3090 209 SUPERFAMILY DNA-binding domain 16 75 IPR016177 GO:0003677
Psa1g3090 209 Pfam AP2 domain 18 66 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g3090 Psa-Chr1 270587643 270589021 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g3090 16 209 AP2-EREBP Transcription Factor Family AT1G19210 45.050 2.20e-47 152
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Psa1g3090 AP2 6.5e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g3090 - - mtr:MTR_2g043040 300.827