Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g3089 ATGGTGAAAACGAATGTGGAGAAACCTGCGGCGGAACGAAGTGATTCATTGTTCCGAGGAGTGAGGAAGAGGAAGTGGGGAAAATACGTGTCGGAAATTAGATTACCAAACAGCCGTCAAAGAATATGGTTAGGCTCTTATGACTCCGCAGAAAAAGCGGCGCGTGCATTTGACGCGGCTATGTTCTGCTTACGTGGCAGTGGTGCCAGGTTTAATTTCCCGACTAATATTCCTGATATTGCCGGAGGAAGGTGCATGACCCATTCTGAGATTCAAGCAGCCGCCGCCCATTTTGCCAATTCGGAGCCCTGTAATGAGTATTCGGGTCGACCCGATAATACTCCAGATCAAACACCATCTTCTTCGGTGGGAACACCAATCACACCATTGTTGCCTATGGATTTGCCATCTCCTGCTCTCTCCGATGTTACTGTTCAAACAGAGAGCGACATAATGGATAACGGGTTGTTTAGTGATTTGTTTTCAGACACTGGGTCGGGTTACACTATGTTTCCGGGGTTTGATGATTTTTGTGGCGAGTTTTACGTGCCGGAGTTCACAAATTTTGATTATGAAGAAGAAAACATGGATGAATTTATAATTCACGATTCCTTTTTATGGAGTTTCTAA 630 0.4508 MVKTNVEKPAAERSDSLFRGVRKRKWGKYVSEIRLPNSRQRIWLGSYDSAEKAARAFDAAMFCLRGSGARFNFPTNIPDIAGGRCMTHSEIQAAAAHFANSEPCNEYSGRPDNTPDQTPSSSVGTPITPLLPMDLPSPALSDVTVQTESDIMDNGLFSDLFSDTGSGYTMFPGFDDFCGEFYVPEFTNFDYEEENMDEFIIHDSFLWSF* 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g3089 209 PRINTS Ethylene responsive element binding protein signature 18 29 IPR001471 GO:0003700|GO:0006355
Psa1g3089 209 PRINTS Ethylene responsive element binding protein signature 40 56 IPR001471 GO:0003700|GO:0006355
Psa1g3089 209 MobiDBLite consensus disorder prediction 106 123 - -
Psa1g3089 209 SMART rav1_2 17 80 IPR001471 GO:0003700|GO:0006355
Psa1g3089 209 Pfam AP2 domain 18 66 IPR001471 GO:0003700|GO:0006355
Psa1g3089 209 MobiDBLite consensus disorder prediction 104 123 - -
Psa1g3089 209 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 3 209 - -
Psa1g3089 209 ProSiteProfiles AP2/ERF domain profile. 17 74 IPR001471 GO:0003700|GO:0006355
Psa1g3089 209 PANTHER TRANSCRIPTION FACTOR AP2-EREBP FAMILY-RELATED 3 209 - -
Psa1g3089 209 CDD AP2 16 74 IPR001471 GO:0003700|GO:0006355
Psa1g3089 209 Gene3D AP2/ERF domain 17 76 IPR036955 GO:0003700|GO:0006355
Psa1g3089 209 SUPERFAMILY DNA-binding domain 16 76 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g3089 Psa-Chr1 270562822 270564046 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g3089 16 209 AP2-EREBP Transcription Factor Family AT1G19210 44.724 2.98e-46 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Psa1g3089 AP2 6.5e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g3089 - - mtr:MTR_2g043040 303.138
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa1g3089 1 270562822 270564046 Psa1g3089 1 270562822 270564046 ECH