Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g3088 ATGGTGAAGACCAACGTGGAACAACAACCTGCGGCGGAACGAAGTGATTCGGTTTACCGAGGAGTGAGGAAGAGGAAATGGGGGAAATATGTGTCGGAGATCAGACTACCGAACAGCCGTCAGAGGATATGGTTGGGTTCTTATGACTCTGCTGAGAAGGCGGCGCGTGCTTTCGACGCGGCTATGTTTTGCTTACGTGGCAGTGGTGCTAGGTTTAATTTTCCGGGTAATATTCCGGAGATTGCTGGAGGAAGGTCTATGACTCCATCTCAGATTCAGGCCGCGGCAGCCCGTTTTGCAAATTCGGGTATTCATGATAAGGATCCGGGTCGACCCGATAATAACGTGGTCGAGGTCGAGTCTTCTTCGTCGGAGGGTGCCGCATTGTTGTTGCCTATGGAATCACAGTCTCCGGCGTTATCTGATTTGACGTTTCAGACGGATTGTGATTCTAAGCAAAACGGGTTGTTTTTGGATTTGTTTGCGGTAAGCGGGTCGGATAATGTTGAACCCGATTTCTCGGTTTTTCCTAGTTTTGATGATTTTGGAGGGGATTTTTATGTCCCGGAGCTGCCAAATTATGATTATGGAGAAGAGAATTTGGATGGATTAATAATTAACGATACTTTTTTATGGAGTTTCTAA 645 0.4682 MVKTNVEQQPAAERSDSVYRGVRKRKWGKYVSEIRLPNSRQRIWLGSYDSAEKAARAFDAAMFCLRGSGARFNFPGNIPEIAGGRSMTPSQIQAAAARFANSGIHDKDPGRPDNNVVEVESSSSEGAALLLPMESQSPALSDLTFQTDCDSKQNGLFLDLFAVSGSDNVEPDFSVFPSFDDFGGDFYVPELPNYDYGEENLDGLIINDTFLWSF* 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g3088 214 ProSiteProfiles AP2/ERF domain profile. 18 75 IPR001471 GO:0003700|GO:0006355
Psa1g3088 214 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 4 214 - -
Psa1g3088 214 CDD AP2 17 75 IPR001471 GO:0003700|GO:0006355
Psa1g3088 214 SUPERFAMILY DNA-binding domain 17 76 IPR016177 GO:0003677
Psa1g3088 214 Pfam AP2 domain 17 67 IPR001471 GO:0003700|GO:0006355
Psa1g3088 214 PRINTS Ethylene responsive element binding protein signature 19 30 IPR001471 GO:0003700|GO:0006355
Psa1g3088 214 PRINTS Ethylene responsive element binding protein signature 41 57 IPR001471 GO:0003700|GO:0006355
Psa1g3088 214 PANTHER TRANSCRIPTION FACTOR AP2-EREBP FAMILY-RELATED 4 214 - -
Psa1g3088 214 SMART rav1_2 18 81 IPR001471 GO:0003700|GO:0006355
Psa1g3088 214 Gene3D AP2/ERF domain 18 76 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g3088 Psa-Chr1 270450979 270452182 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g3088 17 214 AP2-EREBP Transcription Factor Family AT1G19210 47.783 2.09e-52 165
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Psa1g3088 AP2 1.6e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g3088 - - mtr:MTR_2g043040 242.662
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa1g3088 1 270450979 270452182 Psa1g3088 1 270450979 270452182 ECH