Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g3079 ATGTCTACCTCATCGGAACTCTCGGAGGTTTCCGGCCAGAAACCGGCGAGGTCGCCGGAGAAGACAACTTTCTCTCAGACTTGTAGTTTACTGAGTCAATACATCAAGGAAAAAGGTAGCTTCAAAGATCTTTCTCTCGGTATGACATGCAACAACACCGAACCAACTGGGTCTATTGATACTTCTTCACAATTAGGAACAACTATGAACTTGTTTCCAACCATGGAAAACAACTTGGCACCAAAGAATCTTACTACTATGGATTTGCTCTCTCCACAAGCTGCAATTAACAACTCCAATGCTAGTAAGGGACCTAAAGCTGCACAATTGACAATGTTTTACAACGGTCAAGTTGTTGTATTCGACGATTTCCCGGCTGATAGAGCACAAGAGCTCATGGCTTTTGCTAACAAAGGAATCTCTCAAACTCAGAACAACAATTCTTTGTACACTTACACGCCAAGCCAGCCTTCATTTCCTCAGAATTCGGTCAGAACTTCTGTTGATCCCATCGCTCCAATTGTTCCAACTGTGAACAACATCGTCCCTAGCACCTGCAACGGCTCGATTCATGAACACCCTCAAGTGCTTTCCAGACCTAATGTTTGCGATCTTCCAATTATGAGGAAAGCTTCTCTTCATCGGTTCCTCGAGAAAAGAAAGGATAGAGTTGCTTCCAAATCACCATATCAGAGAACAAATCCAATGGAGAGTATTAACAAGCCAGGTGAAAACATGTCATGGCTTATGGGTGCAAAATCAACTCAAATCTGA 774 0.4302 MSTSSELSEVSGQKPARSPEKTTFSQTCSLLSQYIKEKGSFKDLSLGMTCNNTEPTGSIDTSSQLGTTMNLFPTMENNLAPKNLTTMDLLSPQAAINNSNASKGPKAAQLTMFYNGQVVVFDDFPADRAQELMAFANKGISQTQNNNSLYTYTPSQPSFPQNSVRTSVDPIAPIVPTVNNIVPSTCNGSIHEHPQVLSRPNVCDLPIMRKASLHRFLEKRKDRVASKSPYQRTNPMESINKPGENMSWLMGAKSTQI* 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g3079 257 Pfam Jas motif 206 231 IPR018467 -
Psa1g3079 257 ProSiteProfiles Tify domain profile. 103 138 IPR010399 -
Psa1g3079 257 PANTHER PROTEIN TIFY 10A 17 249 - -
Psa1g3079 257 Pfam tify domain 105 137 IPR010399 -
Psa1g3079 257 SMART tify_2 103 138 IPR010399 -
Psa1g3079 257 MobiDBLite consensus disorder prediction 222 257 - -
Psa1g3079 257 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 17 249 IPR040390 -
Psa1g3079 257 MobiDBLite consensus disorder prediction 1 23 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g3079 Psa-Chr1 269108420 269112394 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g3079 1 249 Tify Gene Family AT1G19180 38.519 1.13e-44 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Psa1g3079 tify 2.5e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g3079 K13464 - gmx:100801449 311.997
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa1g3079 1 269108420 269112394 Psa1g3079 1 269108420 269112394 ECH
Psa4g0441 4 26813802 26815027 Psa1g3079 1 269108420 269112394 PCT