Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g3071 ATGAAGGCTCCTTCTAATGGTTACTTGCTTAATTCTGGTGAAGGAGGAGAAAGGAAGACCATAAATTCAGAGTTATGGCATGCTTGTGCCGGGCCATTGGTTTCTATACCTCCTGTTGGAAGTCTTGTTGTTTACTTTCCTCAAGGACACAGCGAGCAAGTTGCAGCATCCATGCAAAAGGAGGCAGATTTCATACCAAGTTACCCTAATCTTCCATCCAAGTTGATTTGCATGCTTCACAATGTTGCTCTTCATGCTGACCCTGAAACCGATGAGGTCTACGCACAGATGACCCTTCAACCTGTAAATAAATATGACAAGGAAGCAATGTTGGCTTCAGACATGGGTCTAAAACAAAACCAACAACCTACTGAATTCTTTTGCAAAACTCTAACAGCTAGTGACACTAGCACTCATGGTGGTTTTTCAGTACCTCGTCGAGCTGCCGAGAAAATATTCCCACCTCTGGACTTTTCAATGCAACCACCAGCTCAGGAAATAGTTGCCAAAGATTTGCATGACACTACATGGACGTTTAGACATATTTATCGCGGACAACCTAAGAGGCATCTATTGACTACTGGTTGGAGTGTCTTTGTTAGCACGAAAAGACTCTTCGCCGGAGATTCTGTTCTTTTTATCAGAGATGAAAAGCAGCAACTTCTTTTAGGTATAAAGAGATCCAGTAGACAGCAACCAGCACTATCTTCATCGGTTATATCGAGCGACAGCATGCATATTGGCATTCTTGCTGCCGCGGCTCATGCTGCTTCGAATAACAGCCCGTTTACTATATTTTATAATCCAAGGACCAGCCCGTGCGAATTTGTGATTCCATTGGCCAAGTATAATAAAGCCCTGTACACTCATGTTTCCCTTGGAATGAGATTCAGAATGATGTTTGAGACTGAGGATTCGGGAGTACGTAGATATATGGGTACAATCACTGGGATTAGTGACTTGGATCCCGTTCGATGGAAAAATTCACAATGGCGCAATCTTCAGGTTGGATGGGATGAATCAACAGCTGGTGAACGTCCAAGCCGAGTTTCGATTTGGGATATCGAACCAGTTGTGACTCCTTTCTACATTTGCCCGCCTCCGTTTTTTAGGCCGAAGTTCCCCAAACAACCAGGAATGCCAGAAGACGAGTCTGAAATCGAAAATGCTTTCAAGAGAGCTATGCCCTGGCTTGGAGATGAACTCGGCATGAAGGATGCGTCGAGTTCAATCTTCCCTGGTTTGAGTTTAGTACAATGGATGAGCATGCAGCAGAATAATAATAATAATCAGTTTTCTTCTCCTCAGTCAGCGCTTTTACCTCCATCCATGCTTTCATCAAACACACTTCACGGTAACGGTAACCTTAACACCGATGATCCGTCCAAGATATTGAACTTTCAATCCCCTGCTGCGCTCTCTGCTCCAAATCTTCAATTTAACAAACCTAATTTACCAAACCAAGTCAATCAGTTGCAACAGCCCCCGACATCGTGGTCTCAGCAGCAGCAACAGCAGCAGAAGATGCAATCATTGTTGCAAACGCCGTTAAACCAGCTGCAGCAACAACAGCAGCAGCAGCAGAGGCAACTGCAGCTGGCCGGACCGCAAAATCTGCCGCAGTCACAACAACAGCCTCAACTAAATCAACATAATACACAGCAGCCTCAGCAGCAGCAGCAACAACAACAACAACCGTGTCAAAACGCCACTATGAATAATGGCACAGTTAGTTCTAACCAGATTTCAAATCAATGTGTGCCGCAACAAGTAACATACTCTCAACTTCAGCAACAGTTACTCTCGACGCAACAAAATTTCCAATCCGGTGGCAAGAATGGATTGATAATGACATCCTTACCACAAGACTCACAATTTCAGCAACAGATAGATCCGCAACAAGCAAGTCTTTTTCAGCGGCAGCAGCAGCAACAAACTCAATTGCAACAATCTTCATTACAGTTATTGCAACAAAGCATGTTACAAAGGACACCACAACAATCGCAAGTATCTCAAATTTTGCCGCAAAACATCTCAGACCAACAATCACAGATGCAGCTGCTACAGAAGTTGCAACAGCAACAACAGCAGCAGCAGCAACCTCTTTCGACGTCTTTGCCACTCTTGCAGTCTCAGCTTCTGCAGCAACAGAATACTCCCCAGCAATTGCCGCAGCTGCCTATGTCACAGCATCAGCCTCAACAGCTTGGCAACAACGCGTTCTCCATGGAGAAGCTTCTCAACAACAACTACTCTTCTTCACCTCTCATGCATTCGCAGCAGCTTCCCGTAAACCATCCTCAGAACACACAAAAGTCACCAACGAATACCAGACCTCCCTCCGCTTTTACAGATGGAGACGCCCCATCATGCTCCACTTCGCCGTCTACTAATAACTGTCAGACGTCGCCTCCAAACCCCCTTAAAAGAAATCAACCAGACGCGTTTGGAGGACCTTCGTTAGTCGAAACTACCAATAATATTATGCATGAGCTTCAAAGTAAGCCCGACATGCAGAATAAACACGAATTACACAGTGAAAAAGGACCTGACAAGCAAAAGCACAAAGGGGCAATCAATGATCAGATGGAAGCTTCTTCCGGAACGTCGTACAATATTGATCCAGTTAACATCCACCAGAACTTTCCACTTTCCAACTTCTACATGGATGGTGATGTCCACTCACAACAACCTCGAAGTAATTTACCATTTGCCCCCAACCTTGATGGATTAACACCCGATCCTTTGCTCTCAAGAGGTTACGATTCTCAAAAAGATCTTCAAAACTTGTTGTCAAATTACGGTGGTGCTCCAAGAGACATTGAAACTGAGCTTTCAACCGCTGATATTAGTTCACAGTCGTTTGGGGTGCCGAACATGTCCTTTAAGCCCGGATGCTCAAATGATATTGCCATCGCTGATACCGGGGTTTTGAACAGTGGCTTATGGTCTAATCAAACTCAACGAATGCGAACGTATACTAAGGTTCAAAAATGTGGCTCGGTCGGAAGATGTATCGATGTCACCCGATACAAGGGATATGAAGAACTCCGAAATGATTTGGCTCGAATGTTTGGGATTGAAGGTCAGCTAGAAGATCCTCTAAGAACCGACTGGAAACTAGTATACGTGGATCACGAAAACGACATTCTTCTCGTAGGGGACGACCCTTGGGAAGAATTTGTAAACTGTGTCCAAAGCATAAAGATACTATCATCTGTTGAAGTACAACAAATGAGCTTGGAAGGGGACTTAGGTTATAATATTCCAATCACCAATCAAGCTTGCAGTGGTTCAGAAAGTGGCAATGCATGGAGAGCGCAATATGATGATAACTCGGCAGCATCGTTCAACCGATGA 3360 0.4452 MKAPSNGYLLNSGEGGERKTINSELWHACAGPLVSIPPVGSLVVYFPQGHSEQVAASMQKEADFIPSYPNLPSKLICMLHNVALHADPETDEVYAQMTLQPVNKYDKEAMLASDMGLKQNQQPTEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPLDFSMQPPAQEIVAKDLHDTTWTFRHIYRGQPKRHLLTTGWSVFVSTKRLFAGDSVLFIRDEKQQLLLGIKRSSRQQPALSSSVISSDSMHIGILAAAAHAASNNSPFTIFYNPRTSPCEFVIPLAKYNKALYTHVSLGMRFRMMFETEDSGVRRYMGTITGISDLDPVRWKNSQWRNLQVGWDESTAGERPSRVSIWDIEPVVTPFYICPPPFFRPKFPKQPGMPEDESEIENAFKRAMPWLGDELGMKDASSSIFPGLSLVQWMSMQQNNNNNQFSSPQSALLPPSMLSSNTLHGNGNLNTDDPSKILNFQSPAALSAPNLQFNKPNLPNQVNQLQQPPTSWSQQQQQQQKMQSLLQTPLNQLQQQQQQQQRQLQLAGPQNLPQSQQQPQLNQHNTQQPQQQQQQQQQPCQNATMNNGTVSSNQISNQCVPQQVTYSQLQQQLLSTQQNFQSGGKNGLIMTSLPQDSQFQQQIDPQQASLFQRQQQQQTQLQQSSLQLLQQSMLQRTPQQSQVSQILPQNISDQQSQMQLLQKLQQQQQQQQQPLSTSLPLLQSQLLQQQNTPQQLPQLPMSQHQPQQLGNNAFSMEKLLNNNYSSSPLMHSQQLPVNHPQNTQKSPTNTRPPSAFTDGDAPSCSTSPSTNNCQTSPPNPLKRNQPDAFGGPSLVETTNNIMHELQSKPDMQNKHELHSEKGPDKQKHKGAINDQMEASSGTSYNIDPVNIHQNFPLSNFYMDGDVHSQQPRSNLPFAPNLDGLTPDPLLSRGYDSQKDLQNLLSNYGGAPRDIETELSTADISSQSFGVPNMSFKPGCSNDIAIADTGVLNSGLWSNQTQRMRTYTKVQKCGSVGRCIDVTRYKGYEELRNDLARMFGIEGQLEDPLRTDWKLVYVDHENDILLVGDDPWEEFVNCVQSIKILSSVEVQQMSLEGDLGYNIPITNQACSGSESGNAWRAQYDDNSAASFNR* 1120
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g3071 1119 CDD B3_DNA 126 218 IPR003340 GO:0003677
Psa1g3071 1119 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 1 1106 IPR044835 GO:0003677|GO:0006355|GO:0009725
Psa1g3071 1119 MobiDBLite consensus disorder prediction 526 569 - -
Psa1g3071 1119 Pfam B3 DNA binding domain 127 228 IPR003340 GO:0003677
Psa1g3071 1119 SUPERFAMILY CAD & PB1 domains 1004 1069 - -
Psa1g3071 1119 Pfam AUX/IAA family 989 1077 IPR033389 -
Psa1g3071 1119 MobiDBLite consensus disorder prediction 837 859 - -
Psa1g3071 1119 ProSiteProfiles B3 DNA-binding domain profile. 127 229 IPR003340 GO:0003677
Psa1g3071 1119 MobiDBLite consensus disorder prediction 491 511 - -
Psa1g3071 1119 ProSiteProfiles PB1 domain profile. 991 1075 IPR000270 GO:0005515
Psa1g3071 1119 PANTHER AUXIN RESPONSE FACTOR 19 1 1106 - -
Psa1g3071 1119 SMART B3_2 127 229 IPR003340 GO:0003677
Psa1g3071 1119 Gene3D - 290 361 - -
Psa1g3071 1119 MobiDBLite consensus disorder prediction 766 809 - -
Psa1g3071 1119 Pfam Auxin response factor 253 335 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Psa1g3071 1119 SUPERFAMILY DNA-binding pseudobarrel domain 117 256 IPR015300 -
Psa1g3071 1119 MobiDBLite consensus disorder prediction 766 812 - -
Psa1g3071 1119 Gene3D - 124 228 IPR015300 -
Psa1g3071 1119 Coils Coil 678 698 - -
Psa1g3071 1119 Gene3D - 986 1080 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g3071 Psa-Chr1 268438598 268445561 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g3071 1 494 B3 DNA Binding Superfamily AT1G19220 81.579 0.0 819
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Psa1g3071 AUX_IAA 1.2e-08 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g3071 K14486 - gmx:100804628 1546.56