Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g3066 ATGGGGACGAAGATAAAGTCCAAAACTCAAGTGGTGAAAAACAAAGACAGCGAAAAGAAAGCCGTTGCTAATGGAACCAACAAAGAAGACAATAACGTTTTTGCTTCTTGCACCTTCTCTAGCCTTGGTCTTCACCCAACCTTATGTGACCAACTTCGCGAAAGAATGGGTTTTGAAGGTCCAACATTAGTGCAAGCTCAAGCCATTCCTGTTGTTCTATCTGGCCGTCACGCACTAGTTAATGCTGCTACTGGCACGGGGAAGACGATTGCATACCTTGCTCCGATAATTCATCATTTACAGAGTTATGATAAGCGAATTGACCGCTCCGATGGAACATTTGCGTTGGTTCTTGTACCAACGCGTGAGTTATGTTTGCAGGTTCATGAAATTCTTCAGAAGTTATTGCATCGGTTTCATTGGATTGTTCCAGGATACATTATGGGTGGTGAGAGTAGATCAAAGGAGAAAGCCAGGCTGCGCAAAGGCATATCAATTCTTATTGCAACTCCTGGGCGCCTTTTAGATCACTTGAAGAATACAGCATCATTCTTGCACACAAATTTGCGCTGGATAATTTTTGATGAAGCTGATCGTATTTTGGAATTAGGATTTGGAAAAGAGATACAAGAAATACTAAATCTTTTAGGTTCAATGAAGACCGGGCATGAGGACCAAGAGAATACAGTTACAAGACCCTCTAAATTTCAAAGACAGAACTTGCTTTTGTCGGCAACCTTAAATGAGAAAGTAAACCACCTTGCCAAAATTAGCTTAGAGGATCCGGTGATGATTGGTATTGATGATAAAACAATGGAACCGACCTCAAAAATTAGATTTGTCCATTCCGACTCTGATGAAGACAATGAAGACAAGTATTCCAATAAAATAGCAGCAGTTGGAGCTTATAAAGTGCCTGAACAGTTGATTCAAAGATATTTGAAGGTGCCTTGTGGATCACGGCTTGCTACACTTCTTTCAGTTCTAAAGCATCTTTTTGAAAGGGAACCTTCACAGAAGGTTGTAGTATTCTTTTCAACATGTGATGCAGTGGACTTTCACTATTCGGTGTTAACAGAATTCCTTTTCTCATCACATCCACAAACTGAAGAAGGGAACAGACCAATTTTTCTTGGATGCAAAACTCTTCGGCTACATGGTAATATGGAACAGGAGGACAGGACGACCAGTTTTCAGGCCTTTAAAACTGATAAATCTGCCCTTCTTTTGTCTACTGACGTTTCTGCCAGAGGCCTAGATTTTCCAAATGTTAGATGCATCATACAATATGATTCTCCCGGAGAAGCTACTGAATATGTGCATAGAGTTGGAAGAACAGCTCGACTGGGCGAAAGAGGAGAGTCATTGTTATTTCTGCAACCTGCTGAAATAGACTATTTACAAGATTTGAAGAAACACGGTGTCTCATTAACAGAGTATCCTCTCCTCAAAGTGTTGGACAGTTTCCCAATGTCTGGACACAAAAACATGAAGAATTCTGTTTTCATAGACATGCATCCCTGGATCATGTGTCTCCAGAAGGCACTCGAGTCCTTCCTCTCTTCCAAGCCCCATATGGATGAACTTGCCAAGAAGGCATTTTGCTCTTGGGTCCGTGCATACACAGCACATCGCGGGGACCTGAAAAGAATATTTATGGTCAAGAAACTTCACTTGGGGCACGTAGCAAAAAGCTTTGCGTTGAAACAAATCCCTTCTTTAGTTGGAAAATCATTCCAAAACCAAGCTAAGAAGAGAAAAAGATTTGAGAAGAAAAGTGGGCCGTCAAATAAGAGAAAAGTTGCACGACGGGTGAAGTAA 1821 0.4124 MGTKIKSKTQVVKNKDSEKKAVANGTNKEDNNVFASCTFSSLGLHPTLCDQLRERMGFEGPTLVQAQAIPVVLSGRHALVNAATGTGKTIAYLAPIIHHLQSYDKRIDRSDGTFALVLVPTRELCLQVHEILQKLLHRFHWIVPGYIMGGESRSKEKARLRKGISILIATPGRLLDHLKNTASFLHTNLRWIIFDEADRILELGFGKEIQEILNLLGSMKTGHEDQENTVTRPSKFQRQNLLLSATLNEKVNHLAKISLEDPVMIGIDDKTMEPTSKIRFVHSDSDEDNEDKYSNKIAAVGAYKVPEQLIQRYLKVPCGSRLATLLSVLKHLFEREPSQKVVVFFSTCDAVDFHYSVLTEFLFSSHPQTEEGNRPIFLGCKTLRLHGNMEQEDRTTSFQAFKTDKSALLLSTDVSARGLDFPNVRCIIQYDSPGEATEYVHRVGRTARLGERGESLLFLQPAEIDYLQDLKKHGVSLTEYPLLKVLDSFPMSGHKNMKNSVFIDMHPWIMCLQKALESFLSSKPHMDELAKKAFCSWVRAYTAHRGDLKRIFMVKKLHLGHVAKSFALKQIPSLVGKSFQNQAKKRKRFEKKSGPSNKRKVARRVK* 607
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g3066 606 PANTHER ATP-DEPENDENT RNA HELICASE DDX31-RELATED 21 598 - -
Psa1g3066 606 MobiDBLite consensus disorder prediction 9 23 - -
Psa1g3066 606 SMART ultradead3 57 281 IPR014001 -
Psa1g3066 606 CDD DEADc_DDX31 48 266 - -
Psa1g3066 606 PANTHER RNA HELICASE 21 598 - -
Psa1g3066 606 SMART helicmild6 352 450 IPR001650 -
Psa1g3066 606 MobiDBLite consensus disorder prediction 1 23 - -
Psa1g3066 606 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 193 201 IPR000629 -
Psa1g3066 606 Gene3D - 319 593 IPR027417 -
Psa1g3066 606 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 37 66 IPR014014 GO:0003724
Psa1g3066 606 MobiDBLite consensus disorder prediction 582 606 - -
Psa1g3066 606 Pfam Helicase conserved C-terminal domain 328 450 IPR001650 -
Psa1g3066 606 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 112 471 IPR027417 -
Psa1g3066 606 CDD SF2_C_DEAD 309 459 - -
Psa1g3066 606 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 69 265 IPR014001 -
Psa1g3066 606 SMART DUF4217_3 511 576 IPR025313 -
Psa1g3066 606 Pfam DEAD/DEAH box helicase 63 253 IPR011545 GO:0003676|GO:0005524
Psa1g3066 606 Pfam Domain of unknown function (DUF4217) 513 573 IPR025313 -
Psa1g3066 606 Gene3D - 3 268 IPR027417 -
Psa1g3066 606 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 324 497 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g3066 Psa-Chr1 267639136 267643914 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g3066 38 482 Eukaryotic Initiation Factors Gene Family AT3G19760 25.612 4.11e-34 132
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g3066 K14806 - gmx:100805157 949.503